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The map label for this gene is 227827909

Identifier: 227827909

GI number: 227827909

Start: 1530166

End: 1530795

Strand: Direct

Name: 227827909

Synonym: M1425_1642

Alternate gene names: NA

Gene position: 1530166-1530795 (Clockwise)

Preceding gene: 227827908

Following gene: 227827910

Centisome position: 58.65

GC content: 28.73

Gene sequence:

>630_bases
GTGGGCAGTATTGATAATCATTGCATTCGCATTAACATTTCTATAATGGTGAATAAAGTGATAATAAAAAAAATAATAGG
TATATCAACTTTTTTCTTAATGTTTCTTGTTACTTTGGGTTTTATGGTAGGTTTATTAGCAACTTTTATAGATTCTACCT
CATTATATTATCTAGAACAATTAAACTACTTAGTAATTAAAGGGTATTATTACGAACTATTCACATCAATATTTATAACT
AATAGCTTTGTTGATTTTATATTTAATTTTATTTCATTATATGTTATATATTTAATTTTTGGTAGTAGAGCGGGAAAACA
TGAATATGGTATATTTATCCTAGCTGGTATTCTAGGAAATCTACTAACTGTAATATTCTATAGTCCTTTTACACTAAGCT
CGGGAGCGTCTGGGGGAATATTTGGATTATTAAGTTACTACACGTTTTACGATTTCTTAAAAAAGGATAATCTAGGGGTT
TATGGTCTTGTATTTTTAGTATCAGTATTTGGAGTTAGTGATTTAATATTCCCTAATGTGAACGTTGTTGCTCATATCGG
AGGTGTTTTGGGAGGTATTATGTACGCAGTTGTCTATTACCTTATAAGGAGTGGAAGGACAATAAAATAA

Upstream 100 bases:

>100_bases
TCTTTGAATTAGCTAGGTTTAACTTCTGGGTAGCATTCTTTAACTTGCTTCCATTCTGGGTTTTAGACGGATTAAAGATC
TTTAGATGGAACATGATAGT

Downstream 100 bases:

>100_bases
TTATGATATTAGTAGAGGAAATACTATTAATTATAGGATTCTTAATGCTCCCATACGGTTTGTACGAAATTATCAAAAGT
GAGGCAGATAGAGCTGTGAA

Product: rhomboid family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MGSIDNHCIRINISIMVNKVIIKKIIGISTFFLMFLVTLGFMVGLLATFIDSTSLYYLEQLNYLVIKGYYYELFTSIFIT
NSFVDFIFNFISLYVIYLIFGSRAGKHEYGIFILAGILGNLLTVIFYSPFTLSSGASGGIFGLLSYYTFYDFLKKDNLGV
YGLVFLVSVFGVSDLIFPNVNVVAHIGGVLGGIMYAVVYYLIRSGRTIK

Sequences:

>Translated_209_residues
MGSIDNHCIRINISIMVNKVIIKKIIGISTFFLMFLVTLGFMVGLLATFIDSTSLYYLEQLNYLVIKGYYYELFTSIFIT
NSFVDFIFNFISLYVIYLIFGSRAGKHEYGIFILAGILGNLLTVIFYSPFTLSSGASGGIFGLLSYYTFYDFLKKDNLGV
YGLVFLVSVFGVSDLIFPNVNVVAHIGGVLGGIMYAVVYYLIRSGRTIK
>Mature_208_residues
GSIDNHCIRINISIMVNKVIIKKIIGISTFFLMFLVTLGFMVGLLATFIDSTSLYYLEQLNYLVIKGYYYELFTSIFITN
SFVDFIFNFISLYVIYLIFGSRAGKHEYGIFILAGILGNLLTVIFYSPFTLSSGASGGIFGLLSYYTFYDFLKKDNLGVY
GLVFLVSVFGVSDLIFPNVNVVAHIGGVLGGIMYAVVYYLIRSGRTIK

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23412; Mature: 23281

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSIDNHCIRINISIMVNKVIIKKIIGISTFFLMFLVTLGFMVGLLATFIDSTSLYYLEQ
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LNYLVIKGYYYELFTSIFITNSFVDFIFNFISLYVIYLIFGSRAGKHEYGIFILAGILGN
CCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LLTVIFYSPFTLSSGASGGIFGLLSYYTFYDFLKKDNLGVYGLVFLVSVFGVSDLIFPNV
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
NVVAHIGGVLGGIMYAVVYYLIRSGRTIK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GSIDNHCIRINISIMVNKVIIKKIIGISTFFLMFLVTLGFMVGLLATFIDSTSLYYLEQ
CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LNYLVIKGYYYELFTSIFITNSFVDFIFNFISLYVIYLIFGSRAGKHEYGIFILAGILGN
CCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LLTVIFYSPFTLSSGASGGIFGLLSYYTFYDFLKKDNLGVYGLVFLVSVFGVSDLIFPNV
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
NVVAHIGGVLGGIMYAVVYYLIRSGRTIK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA