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The map label for this gene is rps4e

Identifier: 227827703

GI number: 227827703

Start: 1346078

End: 1346797

Strand: Direct

Name: rps4e

Synonym: M1425_1432

Alternate gene names: 227827703

Gene position: 1346078-1346797 (Clockwise)

Preceding gene: 227827702

Following gene: 227827704

Centisome position: 51.6

GC content: 34.72

Gene sequence:

>720_bases
ATGGCTCACATAACAAGATTTGAAACACCTTGGTTTTTAGTAATAAGCAAAAAACAATATAAGTGGACGGTTAGACCTAA
TGCTGGACCTCACCCTATAGAGAAAAGTATACCTTTGGCTGTTGTAATTAGGGATTATCTTAAACTTGCGGAAACGGTAA
GAGAGGCTAAGCATATAATATTTGACGGTAAAGTTTTAGTAGATGGCAAGGTAAGGAAAGACTATAAATACCCTGTTGGT
CTTATGGACATTGTTTCAATTCCCTCCGCTGATCTATATTTTAGAGTTATTCCTGATAACGTTAGGTTTATGAGGTTATC
CAAGATATCCGCAGATGAGGCTCATTATAAGTACGTTAGGATCATGAATAAAACTACAGTAAAGGGAGGTAGTATTCAGC
TTAATTTAGAGGATGGAAGAAATATCCTAGTCGATAAAGAAACTGCAAAGAGTTTCAAAACGCTTATGACATTAAAGATT
GAGTTACCAAGCCAAAATATAGTGGATTCATTCATTATCTCTGAAGGCTCATATGCAATCTTTGTAGGCGGTAAGAACGT
CGGTATTCACGGTGTTGTTAAAAATATAAATTTGAGTAAGTTTAAGTCTAGAAAATATAGTGTGATAACACTAGAAAGCA
AAGATGGTAATACTTATCAGACTAATCTCATGAATGTGATGAGTATAGGTAGGGAAAAATCTGACATGAGAGTTGATTAA

Upstream 100 bases:

>100_bases
ATATGTGTGGATTCACGCATCCAAAGTAATGATAACTAAGCTAGATCTGAGTGATCCAAGAAGGAGAGAAAAGTTAGAAA
AATCTAAGAAGTGATGAAAA

Downstream 100 bases:

>100_bases
AATGACAGAGTCTACTTTATCTGTTAATCAAAATCCAATGAGGAAAGTTAAGTTAGCCAAGGTTACTGTTAATATAGGAC
TTGGTGAATCTGGAGATAGG

Product: 30S ribosomal protein S4e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MAHITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVG
LMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKI
ELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGREKSDMRVD

Sequences:

>Translated_239_residues
MAHITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVG
LMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKI
ELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGREKSDMRVD
>Mature_238_residues
AHITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGL
MDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIE
LPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGREKSDMRVD

Specific function: Unknown

COG id: COG1471

COG function: function code J; Ribosomal protein S4E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

Organism=Homo sapiens, GI4506727, Length=228, Percent_Identity=29.8245614035088, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI4506725, Length=229, Percent_Identity=29.6943231441048, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI88703062, Length=228, Percent_Identity=28.0701754385965, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17543386, Length=229, Percent_Identity=32.7510917030568, Blast_Score=120, Evalue=8e-28,
Organism=Saccharomyces cerevisiae, GI6322605, Length=230, Percent_Identity=30.8695652173913, Blast_Score=109, Evalue=5e-25,
Organism=Saccharomyces cerevisiae, GI6321997, Length=230, Percent_Identity=30.8695652173913, Blast_Score=109, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24663672, Length=230, Percent_Identity=29.1304347826087, Blast_Score=103, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24663668, Length=230, Percent_Identity=29.1304347826087, Blast_Score=103, Evalue=7e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS4E_SULIA (C3N5T9)

Other databases:

- EMBL:   CP001401
- RefSeq:   YP_002843409.1
- ProteinModelPortal:   C3N5T9
- GeneID:   7814248
- GenomeReviews:   CP001401_GR
- KEGG:   sim:M1627_1482
- OMA:   QLNLHDG
- ProtClustDB:   PRK04313
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00485
- InterPro:   IPR000876
- InterPro:   IPR022994
- InterPro:   IPR013845
- InterPro:   IPR013843
- InterPro:   IPR002942
- PANTHER:   PTHR11581
- PIRSF:   PIRSF002116
- ProDom:   PD002667
- SMART:   SM00363

Pfam domain/function: PF00900 Ribosomal_S4e; PF08071 RS4NT; PF01479 S4

EC number: NA

Molecular weight: Translated: 27201; Mature: 27070

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS00528 RIBOSOMAL_S4E; PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHII
CCCCEEECCCEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEE
FDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVR
ECCEEEECCEECCCCCCCCCHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEE
IMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAI
EEEEEEECCCEEEEEECCCCEEEEECHHHHHHEEEEEEEEECCCCHHHHHEEECCCCEEE
FVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGREKSDMRVD
EECCCCCCEEEEEECCCHHHHCCCCEEEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AHITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHII
CCCEEECCCEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEE
FDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVR
ECCEEEECCEECCCCCCCCCHHHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEE
IMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAI
EEEEEEECCCEEEEEECCCCEEEEECHHHHHHEEEEEEEEECCCCHHHHHEEECCCCEEE
FVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGREKSDMRVD
EECCCCCCEEEEEECCCHHHHCCCCEEEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA