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The map label for this gene is rpl23p [H]

Identifier: 227827693

GI number: 227827693

Start: 1341854

End: 1342099

Strand: Direct

Name: rpl23p [H]

Synonym: M1425_1422

Alternate gene names: 227827693

Gene position: 1341854-1342099 (Clockwise)

Preceding gene: 227827692

Following gene: 227827694

Centisome position: 51.44

GC content: 32.52

Gene sequence:

>246_bases
ATGATTCAAATGGCTTTAGCTACAGAGAAAGCATTAAAACTTATTGAGTCCTATAATACACTTACATTAATAGTAGATAA
GAGTGATACAAGGGATGACATTAAGAAATCTGTTGAGAGATTATTTAGTGTTAAGGTGGTAAAAGTTAACGTAGTTATAA
CACCTCAAGGTTACAAGAAGGCATATGTAAAATTAGCACCAGAATATAAAGCAAGTGATATAGCCCACAGATTGGGCATT
TTGTGA

Upstream 100 bases:

>100_bases
CATCTGGCTCCAGGTGCACATCCAGGCAGGCTTACTATTTATACTGAAACTAGCATAAAGATTTTAGATGAGCGATTGAG
TAAGAGGTTGGTGAGTTAGA

Downstream 100 bases:

>100_bases
GGTGATATAGAATGGGTAAGAATTTATTACAGCAGAGGGCGGGAAAAGGTTCTCCAACTTTTAGGAGTCCAAGTTGGCTA
CGAATAGGTAAGGTAAGGTA

Product: 50S ribosomal protein L23P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MIQMALATEKALKLIESYNTLTLIVDKSDTRDDIKKSVERLFSVKVVKVNVVITPQGYKKAYVKLAPEYKASDIAHRLGI
L

Sequences:

>Translated_81_residues
MIQMALATEKALKLIESYNTLTLIVDKSDTRDDIKKSVERLFSVKVVKVNVVITPQGYKKAYVKLAPEYKASDIAHRLGI
L
>Mature_81_residues
MIQMALATEKALKLIESYNTLTLIVDKSDTRDDIKKSVERLFSVKVVKVNVVITPQGYKKAYVKLAPEYKASDIAHRLGI
L

Specific function: Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome [H]

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family [H]

Homologues:

Organism=Homo sapiens, GI17105394, Length=81, Percent_Identity=48.1481481481481, Blast_Score=81, Evalue=2e-16,
Organism=Homo sapiens, GI310129763, Length=79, Percent_Identity=41.7721518987342, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17508675, Length=81, Percent_Identity=45.679012345679, Blast_Score=75, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17569427, Length=81, Percent_Identity=44.4444444444444, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6324445, Length=81, Percent_Identity=40.7407407407407, Blast_Score=65, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24655502, Length=81, Percent_Identity=44.4444444444444, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR019985
- InterPro:   IPR012678
- InterPro:   IPR001014
- InterPro:   IPR013025 [H]

Pfam domain/function: PF00276 Ribosomal_L23 [H]

EC number: NA

Molecular weight: Translated: 9122; Mature: 9122

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQMALATEKALKLIESYNTLTLIVDKSDTRDDIKKSVERLFSVKVVKVNVVITPQGYKK
CEEEHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCEEEEEEEEEECCCCCCE
AYVKLAPEYKASDIAHRLGIL
EEEEECCCCCHHHHHHHHCCC
>Mature Secondary Structure
MIQMALATEKALKLIESYNTLTLIVDKSDTRDDIKKSVERLFSVKVVKVNVVITPQGYKK
CEEEHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCEEEEEEEEEECCCCCCE
AYVKLAPEYKASDIAHRLGIL
EEEEECCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11427726 [H]