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The map label for this gene is 227827680

Identifier: 227827680

GI number: 227827680

Start: 1327907

End: 1328521

Strand: Direct

Name: 227827680

Synonym: M1425_1409

Alternate gene names: NA

Gene position: 1327907-1328521 (Clockwise)

Preceding gene: 227827679

Following gene: 227827681

Centisome position: 50.9

GC content: 30.41

Gene sequence:

>615_bases
ATGATGACCATCAATGTCCCTATTGCAAGACCACTGGTAAGGTTATCAGATTGGCTTCTGGAATATGGTACTGTAAGAAA
TGTAATTCTAAGTGGGCCGGTCTTGCATATACACCGTACTAGAATAGTTATAACTTCATCTAGAGATCCTAGTATTAGAA
CAAGAAATTTTTTAAATATTTTAACTTCTCTGTTACCAGACTCAGTTAAAATTACACGGGGTAAGAAAAGTAAGAAAGAG
ATATTTGAAAGGGCTATTAATTTAGGAGCAATATATTTATTGTTCGTATTAGCTAAGAATGGTAACCCGTTGAGAATAAT
TGTTTATGATTTAGAAACTTTTTCTATAAAATATTTTTTTAAATTACACGGTTTATCACTACCTTCTGACTATAATATCC
CATTATATCAGATAAAAAGGCATAATAGTGTATGCATAGAACTAAATAGGTGTGATTTTCTAAGAGATTTTCTAGTCGAT
ATGAATATCTACAACTTGTCAAATAATTGTGATGTTATTGTGAACACGAGGCTAGTCTCTAATAATATTTGTGAACTTTT
GTTTACGTTATCTACGAAAAACATTAAGTTTTTGAAGATGCTATTAGAAGTGTGA

Upstream 100 bases:

>100_bases
GTGGCAATTATGGGGAAAGTCACGGGAATTGCTGGAAGATACGGGGCTAGATATGGATCTACTTTAAGAAAAAAGTGGAA
AGAAATAATGGAAAAGAGGT

Downstream 100 bases:

>100_bases
AGATAGAGATTTCAATTTATCCAGATAATTTCAATAAAAACGAATTACAGGATATAATATATGATTCGATAATAATTGAA
AAGATAGATACTAAATATGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MMTINVPIARPLVRLSDWLLEYGTVRNVILSGPVLHIHRTRIVITSSRDPSIRTRNFLNILTSLLPDSVKITRGKKSKKE
IFERAINLGAIYLLFVLAKNGNPLRIIVYDLETFSIKYFFKLHGLSLPSDYNIPLYQIKRHNSVCIELNRCDFLRDFLVD
MNIYNLSNNCDVIVNTRLVSNNICELLFTLSTKNIKFLKMLLEV

Sequences:

>Translated_204_residues
MMTINVPIARPLVRLSDWLLEYGTVRNVILSGPVLHIHRTRIVITSSRDPSIRTRNFLNILTSLLPDSVKITRGKKSKKE
IFERAINLGAIYLLFVLAKNGNPLRIIVYDLETFSIKYFFKLHGLSLPSDYNIPLYQIKRHNSVCIELNRCDFLRDFLVD
MNIYNLSNNCDVIVNTRLVSNNICELLFTLSTKNIKFLKMLLEV
>Mature_204_residues
MMTINVPIARPLVRLSDWLLEYGTVRNVILSGPVLHIHRTRIVITSSRDPSIRTRNFLNILTSLLPDSVKITRGKKSKKE
IFERAINLGAIYLLFVLAKNGNPLRIIVYDLETFSIKYFFKLHGLSLPSDYNIPLYQIKRHNSVCIELNRCDFLRDFLVD
MNIYNLSNNCDVIVNTRLVSNNICELLFTLSTKNIKFLKMLLEV

Specific function: Probably involved in the biogenesis of the ribosome [H]

COG id: COG2136

COG function: function code JA; Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Brix domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004154
- InterPro:   IPR007109 [H]

Pfam domain/function: PF04427 Brix [H]

EC number: NA

Molecular weight: Translated: 23613; Mature: 23613

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50833 BRIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTINVPIARPLVRLSDWLLEYGTVRNVILSGPVLHIHRTRIVITSSRDPSIRTRNFLNI
CEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCHHHHHHHH
LTSLLPDSVKITRGKKSKKEIFERAINLGAIYLLFVLAKNGNPLRIIVYDLETFSIKYFF
HHHHCCCCEEEECCCCHHHHHHHHHHCCCHHHEEEEEECCCCEEEEEEEECCEEEEEEEE
KLHGLSLPSDYNIPLYQIKRHNSVCIELNRCDFLRDFLVDMNIYNLSNNCDVIVNTRLVS
EEECCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHCCEEEECCCCCCEEEEEEEEC
NNICELLFTLSTKNIKFLKMLLEV
CHHHHEEEECCCCCHHHHHHHHCC
>Mature Secondary Structure
MMTINVPIARPLVRLSDWLLEYGTVRNVILSGPVLHIHRTRIVITSSRDPSIRTRNFLNI
CEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCHHHHHHHH
LTSLLPDSVKITRGKKSKKEIFERAINLGAIYLLFVLAKNGNPLRIIVYDLETFSIKYFF
HHHHCCCCEEEECCCCHHHHHHHHHHCCCHHHEEEEEECCCCEEEEEEEECCEEEEEEEE
KLHGLSLPSDYNIPLYQIKRHNSVCIELNRCDFLRDFLVDMNIYNLSNNCDVIVNTRLVS
EEECCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHCCEEEECCCCCCEEEEEEEEC
NNICELLFTLSTKNIKFLKMLLEV
CHHHHEEEECCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10701121; 11427726 [H]