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The map label for this gene is 227827641

Identifier: 227827641

GI number: 227827641

Start: 1296013

End: 1296528

Strand: Direct

Name: 227827641

Synonym: M1425_1369

Alternate gene names: NA

Gene position: 1296013-1296528 (Clockwise)

Preceding gene: 227827638

Following gene: 227827642

Centisome position: 49.68

GC content: 31.98

Gene sequence:

>516_bases
ATGTGGCAGAACCCAAAGGCTCTTGTAACTACAAAACCTGGTAAAGGTCAGAAATGTATAAATGAAATTTTGAATAGGAT
ACTTATAAAAGATATTCATGCGAGGGTTGTAGAGTATGTGCAAAACGTAATTCTCATTTACTCAAATTTAGACCCATTAG
TAATTTATGGTCTACTTTTCGCTTCTCCTCCATCCTGTGCTGAAAAGGTATATCCATTTCAATCGATTATAAATGCCACT
AACGAAAAGAAGATTGTTGTTAATATAATGAATTTTATGAAAAATAGAGTAAAAGATATCAAAACTTTTTATGTTCGTTG
TTATAGTAGGGGAATTAGTGTAGATTGTAGAGAAATTGAAATGGGAGTAGGGATAGGGCTAAAGGGTTTAATTAATGTTG
ATTTTAAAGATCCGGAGGTTATACTCCACGTTAATGTATTAAAGGAATTCACTGGGATATCGCTTTTGAGAAAGAATCAA
GAAAAGTTTCGGACTACTCTCTTAGATAAAATATAA

Upstream 100 bases:

>100_bases
ATCATAACTCGGCGAATGTAAGTATTGGACAATCTTTTAATAGCTCTAAGTTTTACTTCAATCACAATCTATTTTTTCTT
AGTACAAAACCTTATATCTA

Downstream 100 bases:

>100_bases
GGTAATACCGCTTAATTTAGATTGGGGTAAAAGTTTTGGTTTCAGCTAAGGATATACTTTCAGATAGTTTGAGATCATCA
GTGTTAATAATCAAGCATAA

Product: THUMP domain protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MWQNPKALVTTKPGKGQKCINEILNRILIKDIHARVVEYVQNVILIYSNLDPLVIYGLLFASPPSCAEKVYPFQSIINAT
NEKKIVVNIMNFMKNRVKDIKTFYVRCYSRGISVDCREIEMGVGIGLKGLINVDFKDPEVILHVNVLKEFTGISLLRKNQ
EKFRTTLLDKI

Sequences:

>Translated_171_residues
MWQNPKALVTTKPGKGQKCINEILNRILIKDIHARVVEYVQNVILIYSNLDPLVIYGLLFASPPSCAEKVYPFQSIINAT
NEKKIVVNIMNFMKNRVKDIKTFYVRCYSRGISVDCREIEMGVGIGLKGLINVDFKDPEVILHVNVLKEFTGISLLRKNQ
EKFRTTLLDKI
>Mature_171_residues
MWQNPKALVTTKPGKGQKCINEILNRILIKDIHARVVEYVQNVILIYSNLDPLVIYGLLFASPPSCAEKVYPFQSIINAT
NEKKIVVNIMNFMKNRVKDIKTFYVRCYSRGISVDCREIEMGVGIGLKGLINVDFKDPEVILHVNVLKEFTGISLLRKNQ
EKFRTTLLDKI

Specific function: Unknown

COG id: COG1818

COG function: function code R; Predicted RNA-binding protein, contains THUMP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19571; Mature: 19571

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS51165 THUMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWQNPKALVTTKPGKGQKCINEILNRILIKDIHARVVEYVQNVILIYSNLDPLVIYGLLF
CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ASPPSCAEKVYPFQSIINATNEKKIVVNIMNFMKNRVKDIKTFYVRCYSRGISVDCREIE
CCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
MGVGIGLKGLINVDFKDPEVILHVNVLKEFTGISLLRKNQEKFRTTLLDKI
HCCCCCCCEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MWQNPKALVTTKPGKGQKCINEILNRILIKDIHARVVEYVQNVILIYSNLDPLVIYGLLF
CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ASPPSCAEKVYPFQSIINATNEKKIVVNIMNFMKNRVKDIKTFYVRCYSRGISVDCREIE
CCCCHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
MGVGIGLKGLINVDFKDPEVILHVNVLKEFTGISLLRKNQEKFRTTLLDKI
HCCCCCCCEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA