Click here to switch to the map view.

The map label for this gene is 227827220

Identifier: 227827220

GI number: 227827220

Start: 868253

End: 869149

Strand: Direct

Name: 227827220

Synonym: M1425_0906

Alternate gene names: NA

Gene position: 868253-869149 (Clockwise)

Preceding gene: 227827219

Following gene: 227827224

Centisome position: 33.28

GC content: 37.24

Gene sequence:

>897_bases
GTGCCATTAATTTTCAAGATAGGGTATAACGTTATCCCTCTACAAGACGTTATTTTGCCTACTCCATCATCTAAGGTGTT
AAAATACTTAATACAGAGTGGAAGATTACTCCCTTCGTTAAAGGACTTAATTACATCAAGGGATAAATACAAACCAATTT
TTATATCCCATCTCGGTTTCAACCAGAGGAGGATTTTTCAGACTAATGGAAACTTGAAGAGTATAACCAAGGGAAGCAGG
CTTTCCTCAATAATAGCCTTTTCCACACAATCTAACGTTTTGCCTGAAGTTGCGGATGAGGGTATCTTCGAAACTGTTTA
TGGCAAATTTCACATAATGATTGAGAGTATAGAAATAGTGGAAGTTGAGAAGCTGAAGGAAGAGGTTGAAAAGCACATGA
ACGATAATATAAGAGTGAGGTTTGTTTCCCCTACATTGCTTTCGTCTAAGGTTTTACTTCCTCCTTCCCTTTCTGAAAGG
TATAAGAAAATCGATGCGGGTTACTCAACTTTGCCATCAGTTGGCTTAATTGTTGCTTACGCTTATAATGTATATTGTAA
TTTGATTGGGAAGAAGGAAGTTGAGGTCAGAGCGTTTAAATTTGGCATTCTTTCTAATGCCTTATCTAGAATTATAGGTT
ATGATTTACATCCAGTTACCGTTGCCATTGGTGAGGATAGTAAGGGAAATTTAAGAAAAGCGAGAGGTGTTATGGGTTGG
ATTGAGTTCGACATTCCAGATAAGAGGTTGAAGAGGAGAGCTTTGAAGTATTTGTTAACATCTTCTTACTTGGGTATAGG
AAGAAGTAGGGGTATTGGGTTTGGTGAGATCAGATTGGAGTTTAGGAAAATAGAGGAAAAAGAGGGTAAATATCCTTCCT
CAGACTTTAAAGGTTAA

Upstream 100 bases:

>100_bases
GGGACTTAATTATGAACTTGAACTCCAATGATGGAAAGGTTAGAGATCTTAAGTTAATTTCAGCATATGTTAACGGAGAG
TTAATAAGAGGAGAAGGATA

Downstream 100 bases:

>100_bases
GGTCCAGCATAAGTCAACTCATAAGTTATTAGTTCACACGTTATCATTACCCAATTTTACCTTGCCCTTTATAACTTGAG
CAAGTATAAACTACTGTTGG

Product: CRISPR-associated protein Cas6

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MPLIFKIGYNVIPLQDVILPTPSSKVLKYLIQSGRLLPSLKDLITSRDKYKPIFISHLGFNQRRIFQTNGNLKSITKGSR
LSSIIAFSTQSNVLPEVADEGIFETVYGKFHIMIESIEIVEVEKLKEEVEKHMNDNIRVRFVSPTLLSSKVLLPPSLSER
YKKIDAGYSTLPSVGLIVAYAYNVYCNLIGKKEVEVRAFKFGILSNALSRIIGYDLHPVTVAIGEDSKGNLRKARGVMGW
IEFDIPDKRLKRRALKYLLTSSYLGIGRSRGIGFGEIRLEFRKIEEKEGKYPSSDFKG

Sequences:

>Translated_298_residues
MPLIFKIGYNVIPLQDVILPTPSSKVLKYLIQSGRLLPSLKDLITSRDKYKPIFISHLGFNQRRIFQTNGNLKSITKGSR
LSSIIAFSTQSNVLPEVADEGIFETVYGKFHIMIESIEIVEVEKLKEEVEKHMNDNIRVRFVSPTLLSSKVLLPPSLSER
YKKIDAGYSTLPSVGLIVAYAYNVYCNLIGKKEVEVRAFKFGILSNALSRIIGYDLHPVTVAIGEDSKGNLRKARGVMGW
IEFDIPDKRLKRRALKYLLTSSYLGIGRSRGIGFGEIRLEFRKIEEKEGKYPSSDFKG
>Mature_297_residues
PLIFKIGYNVIPLQDVILPTPSSKVLKYLIQSGRLLPSLKDLITSRDKYKPIFISHLGFNQRRIFQTNGNLKSITKGSRL
SSIIAFSTQSNVLPEVADEGIFETVYGKFHIMIESIEIVEVEKLKEEVEKHMNDNIRVRFVSPTLLSSKVLLPPSLSERY
KKIDAGYSTLPSVGLIVAYAYNVYCNLIGKKEVEVRAFKFGILSNALSRIIGYDLHPVTVAIGEDSKGNLRKARGVMGWI
EFDIPDKRLKRRALKYLLTSSYLGIGRSRGIGFGEIRLEFRKIEEKEGKYPSSDFKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33679; Mature: 33548

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLIFKIGYNVIPLQDVILPTPSSKVLKYLIQSGRLLPSLKDLITSRDKYKPIFISHLGF
CCEEEEECCCEEEHHHEEECCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEECCC
NQRRIFQTNGNLKSITKGSRLSSIIAFSTQSNVLPEVADEGIFETVYGKFHIMIESIEIV
CCCEEEEECCCCHHHCCCCHHHHEEEECCCCCCCHHHHHCCHHHHHHCEEEEEEEEEHHH
EVEKLKEEVEKHMNDNIRVRFVSPTLLSSKVLLPPSLSERYKKIDAGYSTLPSVGLIVAY
HHHHHHHHHHHHCCCCEEEEEECCHHHCCCEECCCCHHHHHHHHHCCCCCCCHHHHHHHH
AYNVYCNLIGKKEVEVRAFKFGILSNALSRIIGYDLHPVTVAIGEDSKGNLRKARGVMGW
HHHHHHEECCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCEEE
IEFDIPDKRLKRRALKYLLTSSYLGIGRSRGIGFGEIRLEFRKIEEKEGKYPSSDFKG
EEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
PLIFKIGYNVIPLQDVILPTPSSKVLKYLIQSGRLLPSLKDLITSRDKYKPIFISHLGF
CEEEEECCCEEEHHHEEECCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEECCC
NQRRIFQTNGNLKSITKGSRLSSIIAFSTQSNVLPEVADEGIFETVYGKFHIMIESIEIV
CCCEEEEECCCCHHHCCCCHHHHEEEECCCCCCCHHHHHCCHHHHHHCEEEEEEEEEHHH
EVEKLKEEVEKHMNDNIRVRFVSPTLLSSKVLLPPSLSERYKKIDAGYSTLPSVGLIVAY
HHHHHHHHHHHHCCCCEEEEEECCHHHCCCEECCCCHHHHHHHHHCCCCCCCHHHHHHHH
AYNVYCNLIGKKEVEVRAFKFGILSNALSRIIGYDLHPVTVAIGEDSKGNLRKARGVMGW
HHHHHHEECCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCEEE
IEFDIPDKRLKRRALKYLLTSSYLGIGRSRGIGFGEIRLEFRKIEEKEGKYPSSDFKG
EEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA