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The map label for this gene is spoIIID [H]

Identifier: 227818041

GI number: 227818041

Start: 5015776

End: 5015982

Strand: Reverse

Name: spoIIID [H]

Synonym: BAMEG_5567

Alternate gene names: 227818041

Gene position: 5015982-5015776 (Counterclockwise)

Preceding gene: 227818042

Following gene: 227818040

Centisome position: 95.91

GC content: 36.71

Gene sequence:

>207_bases
GTGCGTGTCATTGCAAAGGAATTTGGGGTATCAAAGAGTACAGTCCATAAAGATTTAACAGAACGTCTACCAGAAATTAA
TCCAGAGCTCGCAAATGAAGTGAAAGAAATTCTTGATTATCATAAGTCTATTCGTCATTTAAGAGGCGGAGAAGCAACAA
AGCAAAAGTATAGAAAAGAAGATGTAGAAAAGCCGGTACGTCAATAA

Upstream 100 bases:

>100_bases
CACTTCTCACATCCAATTTAGGGAGGCGAGTGGTGTGCACGATTACATCAAAGAGAGAACTATCAAGATTGGTAAGTATA
TCGTGGAGACAAGAAAGACA

Downstream 100 bases:

>100_bases
AGGTACAATCGTGAACATTCCGTTTCAATTCGGTAATATTTTTCAGAAGAATTCTTTTTGCGAATATTACGTTTCTGTTA
AATTTATGATAAAATCAGAA

Product: stage III sporulation protein D

Products: NA

Alternate protein names: 14 kDa transcription factor [H]

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MRVIAKEFGVSKSTVHKDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKEDVEKPVRQ

Sequences:

>Translated_68_residues
MRVIAKEFGVSKSTVHKDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKEDVEKPVRQ
>Mature_68_residues
MRVIAKEFGVSKSTVHKDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKEDVEKPVRQ

Specific function: This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR014208
- InterPro:   IPR018356 [H]

Pfam domain/function: PF12116 SpoIIID [H]

EC number: NA

Molecular weight: Translated: 7970; Mature: 7970

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVIAKEFGVSKSTVHKDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKE
CCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
DVEKPVRQ
HHHHHCCC
>Mature Secondary Structure
MRVIAKEFGVSKSTVHKDLTERLPEINPELANEVKEILDYHKSIRHLRGGEATKQKYRKE
CCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
DVEKPVRQ
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2514119; 2112673; 9353933; 9384377; 2492118 [H]