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The map label for this gene is ydcM [C]

Identifier: 227817926

GI number: 227817926

Start: 4891725

End: 4892765

Strand: Reverse

Name: ydcM [C]

Synonym: BAMEG_5450

Alternate gene names: 227817926

Gene position: 4892765-4891725 (Counterclockwise)

Preceding gene: 227817927

Following gene: 227817925

Centisome position: 93.55

GC content: 33.14

Gene sequence:

>1041_bases
ATGTATGAATCAGAGGGAAGGTTCCTTAGTGGATATGATTTTTCTAAATGGCTAAACAATGTTTATACAAAAGAATGTAG
TCAATGGATTAAAAAGGTATCTAGTAAAGCGGTAAAACAGGCCATTATGAATGGAGATAAAGCTTTTAAAAGATTCTTTC
AGGGTTTATCTGGATTTCCACGTTATAAGAAAAAGAAGAATCAAGATGTGAAATGCTATTTTCCTAAAAACAACAAAACA
GATTGGACAGTAGAAAGACATAGAGTAAAAGTTCCAACGATTGGTTGGATGAGGTTAAAAGAATATGGGTATATCCCAAA
AAATACGATTGTAAAAAGTGGGACGATAGGTAAAAGAGCAGGAAGATATTTTGTATCTGTGCTTTGCGAATGGAAAGAAG
CAGAAATGAAGCCAATACTCAATCAAACAGGTCTAGGTATTGATTTGGGGGTAAAGGATTTCGCTATACGTAGCGATGGT
ATCGTTTATGAAAATATGAACAAAACAATACAAGTAAAAAAGATAGAAAAACGGTTGAAACGTGAACAACGCTCTTTATC
ACGCAAATTTGAAAATATAAGAAAGAGAGGTGAACAATCTGCTACTAACAAAAGAGCGAATATAGATAAAAATATTCTTA
GGGTGCAAAAACTACATGCCAAGCTAGCAAATATTCGATTAGCGTATGTAAAATCTGTTGTAAATGATGTGGTGAAAACC
AAGCCAACGTTTATTACAGTGGAAGATTTGAATGTAAAAGGTATGATGAAGAATAAACATCTATCTAAAGCAGTTGCTAA
GCAGTGCTTTTATACATTTAAAACATGGTTATTGACGAAATGTGAGGAATATGGAATTGAATTACGTCAAGTAGACAGGT
TCTATCCATCTTCAAAGCTATGTTCATACTGTGGTCAAAAGAAAGTAGACTTAAAGCTATCCGACCGAGTATATACATGT
AACTGTGGAAATGTAATGGATAGAGATTTGAACGCGTCAATAAACCTTTTACAAGCAAAAAAATATACAATACTAACGTA
A

Upstream 100 bases:

>100_bases
TATAGAGATAAAACCGACACATGAACAAATAACCAAGATCAATCAAACGATTGGGGTTTGTAGGTACGTTTACAATCTGT
ATCTCTCCAAAAACAAAGAG

Downstream 100 bases:

>100_bases
ATAGATTGTATATATGTACGGTGGGCTACATCGGAATTTACGCCTGTGGAGTGTTAGATCAAACTGTAGTAGCGAGTGGT
TGGCAAGGCAGGACACGTAG

Product: transposase, IS605 family

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MYESEGRFLSGYDFSKWLNNVYTKECSQWIKKVSSKAVKQAIMNGDKAFKRFFQGLSGFPRYKKKKNQDVKCYFPKNNKT
DWTVERHRVKVPTIGWMRLKEYGYIPKNTIVKSGTIGKRAGRYFVSVLCEWKEAEMKPILNQTGLGIDLGVKDFAIRSDG
IVYENMNKTIQVKKIEKRLKREQRSLSRKFENIRKRGEQSATNKRANIDKNILRVQKLHAKLANIRLAYVKSVVNDVVKT
KPTFITVEDLNVKGMMKNKHLSKAVAKQCFYTFKTWLLTKCEEYGIELRQVDRFYPSSKLCSYCGQKKVDLKLSDRVYTC
NCGNVMDRDLNASINLLQAKKYTILT

Sequences:

>Translated_346_residues
MYESEGRFLSGYDFSKWLNNVYTKECSQWIKKVSSKAVKQAIMNGDKAFKRFFQGLSGFPRYKKKKNQDVKCYFPKNNKT
DWTVERHRVKVPTIGWMRLKEYGYIPKNTIVKSGTIGKRAGRYFVSVLCEWKEAEMKPILNQTGLGIDLGVKDFAIRSDG
IVYENMNKTIQVKKIEKRLKREQRSLSRKFENIRKRGEQSATNKRANIDKNILRVQKLHAKLANIRLAYVKSVVNDVVKT
KPTFITVEDLNVKGMMKNKHLSKAVAKQCFYTFKTWLLTKCEEYGIELRQVDRFYPSSKLCSYCGQKKVDLKLSDRVYTC
NCGNVMDRDLNASINLLQAKKYTILT
>Mature_346_residues
MYESEGRFLSGYDFSKWLNNVYTKECSQWIKKVSSKAVKQAIMNGDKAFKRFFQGLSGFPRYKKKKNQDVKCYFPKNNKT
DWTVERHRVKVPTIGWMRLKEYGYIPKNTIVKSGTIGKRAGRYFVSVLCEWKEAEMKPILNQTGLGIDLGVKDFAIRSDG
IVYENMNKTIQVKKIEKRLKREQRSLSRKFENIRKRGEQSATNKRANIDKNILRVQKLHAKLANIRLAYVKSVVNDVVKT
KPTFITVEDLNVKGMMKNKHLSKAVAKQCFYTFKTWLLTKCEEYGIELRQVDRFYPSSKLCSYCGQKKVDLKLSDRVYTC
NCGNVMDRDLNASINLLQAKKYTILT

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=356, Percent_Identity=28.6516853932584, Blast_Score=136, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 40313; Mature: 40313

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYESEGRFLSGYDFSKWLNNVYTKECSQWIKKVSSKAVKQAIMNGDKAFKRFFQGLSGFP
CCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
RYKKKKNQDVKCYFPKNNKTDWTVERHRVKVPTIGWMRLKEYGYIPKNTIVKSGTIGKRA
CHHHCCCCCEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCEEECCCCCHHH
GRYFVSVLCEWKEAEMKPILNQTGLGIDLGVKDFAIRSDGIVYENMNKTIQVKKIEKRLK
HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHEECCCCEEEECCCCEEEHHHHHHHHH
REQRSLSRKFENIRKRGEQSATNKRANIDKNILRVQKLHAKLANIRLAYVKSVVNDVVKT
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KPTFITVEDLNVKGMMKNKHLSKAVAKQCFYTFKTWLLTKCEEYGIELRQVDRFYPSSKL
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHH
CSYCGQKKVDLKLSDRVYTCNCGNVMDRDLNASINLLQAKKYTILT
HHHCCCCEEEEEECCEEEEECCCCCCCCCCCCCEEEEEECCEEECC
>Mature Secondary Structure
MYESEGRFLSGYDFSKWLNNVYTKECSQWIKKVSSKAVKQAIMNGDKAFKRFFQGLSGFP
CCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
RYKKKKNQDVKCYFPKNNKTDWTVERHRVKVPTIGWMRLKEYGYIPKNTIVKSGTIGKRA
CHHHCCCCCEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCEEECCCCCHHH
GRYFVSVLCEWKEAEMKPILNQTGLGIDLGVKDFAIRSDGIVYENMNKTIQVKKIEKRLK
HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHEECCCCEEEECCCCEEEHHHHHHHHH
REQRSLSRKFENIRKRGEQSATNKRANIDKNILRVQKLHAKLANIRLAYVKSVVNDVVKT
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KPTFITVEDLNVKGMMKNKHLSKAVAKQCFYTFKTWLLTKCEEYGIELRQVDRFYPSSKL
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHH
CSYCGQKKVDLKLSDRVYTCNCGNVMDRDLNASINLLQAKKYTILT
HHHCCCCEEEEEECCEEEEECCCCCCCCCCCCCEEEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]