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The map label for this gene is yunD [H]

Identifier: 227817746

GI number: 227817746

Start: 4729657

End: 4730913

Strand: Reverse

Name: yunD [H]

Synonym: BAMEG_5266

Alternate gene names: 227817746

Gene position: 4730913-4729657 (Counterclockwise)

Preceding gene: 227817750

Following gene: 227817745

Centisome position: 90.46

GC content: 39.62

Gene sequence:

>1257_bases
GTGGATCGTTTTCATAGTATTTCGGAAGCGACGAATGGACTTGGCAATACGAAGCTTTTAAATGAGGCGTTATATGATTA
TGTAACGATCGGAAATAATGAAGGAATTACGTTAGCGAAGGAGCATTTGAATCATCTATATGATGATGCTGAATTTGAGG
TGCTCGTTGCGAATTTATTTGAAAAAGAAGGGGTACGTCCAGAGTGGGCGAAGCCTTATAAATTACATACAACGACAGAT
GGGATTACGATTGCTTTTATCGGATTAACAGTTGCGTATCCAGAGTTTTATCAAATGTTAGATTGGCATATTGAAGATCC
AATCGAGCATTTAGAGTCTATTTTAGAAGAAGTGAGAGATGAGGCTCATATAACGGTTGTCCTTTCTCATCTTGGAAAAA
GTATGGATGAGCATATGGCGGAGCATTATGATATAGATGTGATTTTAGGGGCACATACGCATCATTTATTTGAGCGCGGT
GTTCTTATGAATAATACGTTACTTTGTTGTTGTGAAAAGTGGGGACGTTATGTTGGGCACGTCCAGCTTACTGTGGATAA
AAAGACGAAGAAGCTGTTGAAAAAGGACGGTAGAGCGATTAAGACAGACCGTTTAGGTGCTTATAGTAAACCGTTATCCA
CAATTGAAGCGCTGCAGGAAGAAAGTACACATATTATGGAAGAACCTGTCGTTCATTTGAAGGAATCATTACCGGTTGAT
TGGTTTCATGAGACAGCATTTTCGCACATGTTAGCAAATGCGCTGAAAACGTGGTGCGGTGCAGAGATTGGCATGGTGAA
CGCTGGTGTACTTCTTGAAGGATTAGATGAAGGTGTTGTGACGCGCGGAGATATTCACAGAATTTGTCCACATCCAATTA
ATCCATGTTTATTAAAGGTGCCGGGGAAAACGCTAAGAGAAGTTATTTTAAAGGCACGTCGCCCGAATATGGAGAACCTT
GAGGTAAAAGGATTCGGATTTCGCGGGAAAGTGATGGGGAAAATGATTTACGCTGGTGTAGAAGTCATTCCAGATACGAT
TCCCGGGAATAAAATTTTACTCGAAGATGTATTAATTAACGGAGAATCGCTGGAATTAGATCGTATATATACAGTAGGAA
CGATTGATATGTTTACATTTGGCTACTTATACCCAGAGCTATCCACACTTTCTAACAAACAATATTATATGCCAGAACTA
CTTAGAGATGTGTTAACGGACGTGTTAATAACTCATACATCTTCTGTCAAACTATAG

Upstream 100 bases:

>100_bases
TTTTGAAAATTGGCCGCAAATTTCTCGGTTTGTACAAGGAGAGAAAAAGCGAAGACAGGAAGCAGGAGAGACCGTTTTAA
CTGTAGATATTGGCGATCAT

Downstream 100 bases:

>100_bases
GCTAGTTAACTTGTAACACTCATTTTTCTCTTGTCATACAGATAAGAAAGAGAGGAGTGTGAACTATGGTTAATGTGGAG
CCAATTATAATCGATAATTA

Product: 5'-nucleotidase family protein

Products: ribonucleoside; phosphate

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MDRFHSISEATNGLGNTKLLNEALYDYVTIGNNEGITLAKEHLNHLYDDAEFEVLVANLFEKEGVRPEWAKPYKLHTTTD
GITIAFIGLTVAYPEFYQMLDWHIEDPIEHLESILEEVRDEAHITVVLSHLGKSMDEHMAEHYDIDVILGAHTHHLFERG
VLMNNTLLCCCEKWGRYVGHVQLTVDKKTKKLLKKDGRAIKTDRLGAYSKPLSTIEALQEESTHIMEEPVVHLKESLPVD
WFHETAFSHMLANALKTWCGAEIGMVNAGVLLEGLDEGVVTRGDIHRICPHPINPCLLKVPGKTLREVILKARRPNMENL
EVKGFGFRGKVMGKMIYAGVEVIPDTIPGNKILLEDVLINGESLELDRIYTVGTIDMFTFGYLYPELSTLSNKQYYMPEL
LRDVLTDVLITHTSSVKL

Sequences:

>Translated_418_residues
MDRFHSISEATNGLGNTKLLNEALYDYVTIGNNEGITLAKEHLNHLYDDAEFEVLVANLFEKEGVRPEWAKPYKLHTTTD
GITIAFIGLTVAYPEFYQMLDWHIEDPIEHLESILEEVRDEAHITVVLSHLGKSMDEHMAEHYDIDVILGAHTHHLFERG
VLMNNTLLCCCEKWGRYVGHVQLTVDKKTKKLLKKDGRAIKTDRLGAYSKPLSTIEALQEESTHIMEEPVVHLKESLPVD
WFHETAFSHMLANALKTWCGAEIGMVNAGVLLEGLDEGVVTRGDIHRICPHPINPCLLKVPGKTLREVILKARRPNMENL
EVKGFGFRGKVMGKMIYAGVEVIPDTIPGNKILLEDVLINGESLELDRIYTVGTIDMFTFGYLYPELSTLSNKQYYMPEL
LRDVLTDVLITHTSSVKL
>Mature_418_residues
MDRFHSISEATNGLGNTKLLNEALYDYVTIGNNEGITLAKEHLNHLYDDAEFEVLVANLFEKEGVRPEWAKPYKLHTTTD
GITIAFIGLTVAYPEFYQMLDWHIEDPIEHLESILEEVRDEAHITVVLSHLGKSMDEHMAEHYDIDVILGAHTHHLFERG
VLMNNTLLCCCEKWGRYVGHVQLTVDKKTKKLLKKDGRAIKTDRLGAYSKPLSTIEALQEESTHIMEEPVVHLKESLPVD
WFHETAFSHMLANALKTWCGAEIGMVNAGVLLEGLDEGVVTRGDIHRICPHPINPCLLKVPGKTLREVILKARRPNMENL
EVKGFGFRGKVMGKMIYAGVEVIPDTIPGNKILLEDVLINGESLELDRIYTVGTIDMFTFGYLYPELSTLSNKQYYMPEL
LRDVLTDVLITHTSSVKL

Specific function: Unknown

COG id: COG0737

COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallophosphoesterase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008334
- InterPro:   IPR006179
- InterPro:   IPR011240 [H]

Pfam domain/function: PF02872 5_nucleotid_C [H]

EC number: 3.1.3.5

Molecular weight: Translated: 47300; Mature: 47300

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFHSISEATNGLGNTKLLNEALYDYVTIGNNEGITLAKEHLNHLYDDAEFEVLVANLF
CCCHHHHHHHHCCCCCHHHHHHHHHHEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
EKEGVRPEWAKPYKLHTTTDGITIAFIGLTVAYPEFYQMLDWHIEDPIEHLESILEEVRD
HHCCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
EAHITVVLSHLGKSMDEHMAEHYDIDVILGAHTHHLFERGVLMNNTLLCCCEKWGRYVGH
CHHHHHHHHHHCCHHHHHHHHHCCEEEEECCHHHHHHHCCCHHCCHHHHHHHHHCHHEEE
VQLTVDKKTKKLLKKDGRAIKTDRLGAYSKPLSTIEALQEESTHIMEEPVVHLKESLPVD
EEEEECHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
WFHETAFSHMLANALKTWCGAEIGMVNAGVLLEGLDEGVVTRGDIHRICPHPINPCLLKV
HHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHCCCCCCEECCCHHHCCCCCCCCEEEEC
PGKTLREVILKARRPNMENLEVKGFGFRGKVMGKMIYAGVEVIPDTIPGNKILLEDVLIN
CCHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCC
GESLELDRIYTVGTIDMFTFGYLYPELSTLSNKQYYMPELLRDVLTDVLITHTSSVKL
CCCEEECEEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDRFHSISEATNGLGNTKLLNEALYDYVTIGNNEGITLAKEHLNHLYDDAEFEVLVANLF
CCCHHHHHHHHCCCCCHHHHHHHHHHEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
EKEGVRPEWAKPYKLHTTTDGITIAFIGLTVAYPEFYQMLDWHIEDPIEHLESILEEVRD
HHCCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
EAHITVVLSHLGKSMDEHMAEHYDIDVILGAHTHHLFERGVLMNNTLLCCCEKWGRYVGH
CHHHHHHHHHHCCHHHHHHHHHCCEEEEECCHHHHHHHCCCHHCCHHHHHHHHHCHHEEE
VQLTVDKKTKKLLKKDGRAIKTDRLGAYSKPLSTIEALQEESTHIMEEPVVHLKESLPVD
EEEEECHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
WFHETAFSHMLANALKTWCGAEIGMVNAGVLLEGLDEGVVTRGDIHRICPHPINPCLLKV
HHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHCCCCCCEECCCHHHCCCCCCCCEEEEC
PGKTLREVILKARRPNMENLEVKGFGFRGKVMGKMIYAGVEVIPDTIPGNKILLEDVLIN
CCHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCC
GESLELDRIYTVGTIDMFTFGYLYPELSTLSNKQYYMPELLRDVLTDVLITHTSSVKL
CCCEEECEEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 5'-ribonucleotide; H2O

Specific reaction: A 5'-ribonucleotide + H2O = a ribonucleoside + phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]