Click here to switch to the map view.

The map label for this gene is yvoA [H]

Identifier: 227816831

GI number: 227816831

Start: 3909620

End: 3910177

Strand: Reverse

Name: yvoA [H]

Synonym: BAMEG_4313

Alternate gene names: 227816831

Gene position: 3910177-3909620 (Counterclockwise)

Preceding gene: 227816832

Following gene: 227816829

Centisome position: 74.76

GC content: 39.61

Gene sequence:

>558_bases
GTGGAACAAGGTTATTTATATCGGAAACGTGGAATCGGTACGTTTGTCCAACTTCCGAAAGTGGAACAAAAATTGCAAGG
AATGACAGGATTCACAGAAGATATGATTTCTCGTGGAATGAACCCAAGTAGTCAATTGCTAAGTTTCCGCCTAGTTCCAG
CTACTGCGAAAATAGCAGACCGGCTGAGAATACAGGAGGGAGAATCGGTTTATGAAGTGAGACGTATTCGTTTAGCGGAT
GATGAACCGATTGCTTTTGAGACGACATATTTGTCGCCAGCTCTTGTAAAAGATATTAACGAAGAAATATTGCAACAATC
TTTATATGAACATCTAGAGAAAAAACTGGGCTTTAAACTTGTTAGCGCTACTCAATCAATTGAAGCTTCAATTGCAACGG
ATAATGAAGCGGAACATCTGCATATTCCTAAAAAGGCGCCAGTGCTTGTAATGCGTCAATGGTCATATTCAGAAGGTGAA
GTACCGTTAGAGTATGTGAAATGTATTTATCGCGGGGATCGTTATAAGTTTATTACGAACATCGCACGTAACAAATAA

Upstream 100 bases:

>100_bases
CGGCGAATGGAAGCCGGGAGATAAAATCCCATCTGAGAATGAACTTTGCGATAAGTTCGAAGTGAGTCGTATGACAATCA
GACAGGCGATTAATAATTTA

Downstream 100 bases:

>100_bases
TATATTTCAGTTTGTGAAGTACAGTAAATGTCAAATTGTTTAACATGTAAAGAAAAAATACGACTCATCCTTACAAGGAG
TGAGTCGTATTTTTATTATG

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MEQGYLYRKRGIGTFVQLPKVEQKLQGMTGFTEDMISRGMNPSSQLLSFRLVPATAKIADRLRIQEGESVYEVRRIRLAD
DEPIAFETTYLSPALVKDINEEILQQSLYEHLEKKLGFKLVSATQSIEASIATDNEAEHLHIPKKAPVLVMRQWSYSEGE
VPLEYVKCIYRGDRYKFITNIARNK

Sequences:

>Translated_185_residues
MEQGYLYRKRGIGTFVQLPKVEQKLQGMTGFTEDMISRGMNPSSQLLSFRLVPATAKIADRLRIQEGESVYEVRRIRLAD
DEPIAFETTYLSPALVKDINEEILQQSLYEHLEKKLGFKLVSATQSIEASIATDNEAEHLHIPKKAPVLVMRQWSYSEGE
VPLEYVKCIYRGDRYKFITNIARNK
>Mature_185_residues
MEQGYLYRKRGIGTFVQLPKVEQKLQGMTGFTEDMISRGMNPSSQLLSFRLVPATAKIADRLRIQEGESVYEVRRIRLAD
DEPIAFETTYLSPALVKDINEEILQQSLYEHLEKKLGFKLVSATQSIEASIATDNEAEHLHIPKKAPVLVMRQWSYSEGE
VPLEYVKCIYRGDRYKFITNIARNK

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=178, Percent_Identity=27.5280898876405, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1790118, Length=173, Percent_Identity=27.7456647398844, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1788418, Length=180, Percent_Identity=27.7777777777778, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI1786950, Length=186, Percent_Identity=28.494623655914, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI87082252, Length=182, Percent_Identity=24.1758241758242, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 21272; Mature: 21272

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQGYLYRKRGIGTFVQLPKVEQKLQGMTGFTEDMISRGMNPSSQLLSFRLVPATAKIAD
CCCCCEEHHCCCCHHHCCCHHHHHHCCCCCCHHHHHHCCCCCHHHHHEEEECCHHHHHHH
RLRIQEGESVYEVRRIRLADDEPIAFETTYLSPALVKDINEEILQQSLYEHLEKKLGFKL
HHHCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH
VSATQSIEASIATDNEAEHLHIPKKAPVLVMRQWSYSEGEVPLEYVKCIYRGDRYKFITN
HHHHHHHHHEECCCCCCCEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHH
IARNK
HHCCC
>Mature Secondary Structure
MEQGYLYRKRGIGTFVQLPKVEQKLQGMTGFTEDMISRGMNPSSQLLSFRLVPATAKIAD
CCCCCEEHHCCCCHHHCCCHHHHHHCCCCCCHHHHHHCCCCCHHHHHEEEECCHHHHHHH
RLRIQEGESVYEVRRIRLADDEPIAFETTYLSPALVKDINEEILQQSLYEHLEKKLGFKL
HHHCCCCCHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH
VSATQSIEASIATDNEAEHLHIPKKAPVLVMRQWSYSEGEVPLEYVKCIYRGDRYKFITN
HHHHHHHHHEECCCCCCCEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHH
IARNK
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]