Click here to switch to the map view.

The map label for this gene is ymfN [H]

Identifier: 227816663

GI number: 227816663

Start: 3773376

End: 3774890

Strand: Reverse

Name: ymfN [H]

Synonym: BAMEG_4141

Alternate gene names: 227816663

Gene position: 3774890-3773376 (Counterclockwise)

Preceding gene: 227816664

Following gene: 227816662

Centisome position: 72.18

GC content: 35.91

Gene sequence:

>1515_bases
ATGGAGTTCATTGAGAATTTTTGCAAGCATTCAAAGGGGAAATGGGCTGGAAAACCTATTGACCTTGAGCTATGGCAAAA
AGCATTTATTGGTTCTTTATTTGGATTTATTCACAAAATAGATGGCACACGAAAATATCGTGAGGCCCTTTTAATCGTGG
CCCGTAAAAATGGTAAGTCCACATTATCATCTGGTATTTGCTTATATCTACAGATAGCAGATGGAGAAGGTGGAGCTGAA
GTTTATGCGGTAGCAACAAAAGAAAAACAGGCGAAAATTGTTTGGTCTGAAGCAAAACGAATGGTAAAAAAATCACCAGT
TCTTTCAAAACGTATTAAAGCATTAGTGAAAGAATTAAATGCAGATTTTAATGACAGTACATTTCAGCCTGTTGGTAGTG
ATAGTGATACATTAGATGGTCTGAATGTTCACGGTGCCTCGCTTGATGAAATTCACGCTTGGAAAGATAAGAATCTTTAT
GATGTTATTGTGGATGGAACATCAGCCCGGGAACAACCGCTTATCCTTATGATTACGACAGCTGGTACTGTCCGGGAATC
TGTATATGATATGAAGTACGAAGAAGCAGAAAGGCTTTTGTTGAGTCTGGACGATGAAAAAGAATATACGGATCCGACAT
TTTTACCGATTATTTATGAGTTAGACAGTCGTAAGGAATGGACAGACCCGAAATGCTGGAAAAAAGCTAATCCAGGTTTA
GGAACAATCAAGAAAATCGATAATCTTCAAACGAAAGTAAATAAGGCACAAGCTAATCCTTTACTTGTTAAAAACTTACT
AACAAAGGATTTTAATGTGCGAGAAACTTCAAGTGAAGCATGGTTAACATTTGAACAATTGAATAACAAACAAACCTTTG
ATGTGATGGAACTAAAACCTAATTATGGTATTGGTGGAACGGATTTGTCCGAAACGACCGATTTAACCGCGGCAAAGGTT
ATTTTTATGCTCCCAAACGATATAAATGTATATGTCTTACAGATGTATTGGCTTCCTGAAGAGTTATTGGAACAACGATC
TAAGGAAGATAAAATACCATATGATTTATGGCATGAAGCTGGTTACTTAAGAACGACTCCTGGTAACAGTATTCACCCTA
AATTTGTTACTGAATGGTTCTTAGAAATAAGAGATGAGTATGGAATTTATTTACCGTGGATTGGTTACGATAGATGGTCC
GCGAAATATTGGGTTGAGGAAATGCAGGGTTACTTTGGGAAAGAAGCTATGGTTCCTGTTGCGCAAGGTAAACAAACTTT
ATCTATGCCGATGAAGCTTCTTGGAGCAGATTTAGAAGCGAAGAGAATTATATATAATAATAATCCTATTGATAAATGGT
GTTTATCGAATACGGCTATTGATATTGATAAAAACCTTAATATACAACCTGATAAAACGAATAATCAGCGTAGAAGAATT
GATGGAACAGCAGCTCTTTTAGATGCATACGTAGTTTTACAAGAAAAGAAAAATGATTATCTAAATATGATTTAA

Upstream 100 bases:

>100_bases
TGTAGGATATAAGGTTAAGAGAATATATAAGAAGCTTGTAGATGATATTTATGACCAAGATTCAATATACGAATATAATC
CCAAAAGAGCCAATCATGCA

Downstream 100 bases:

>100_bases
AGGGGGTGAAAACTTGGGGCTATTTAATAAGATATTCGGAAAGAAGCAACCACCTACTACAACTCGTTTTGAAATGATAA
ACGACAATGGAGGAGGCTTT

Product: putative prophage LambdaBa04, terminase, large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 504

Protein sequence:

>504_residues
MEFIENFCKHSKGKWAGKPIDLELWQKAFIGSLFGFIHKIDGTRKYREALLIVARKNGKSTLSSGICLYLQIADGEGGAE
VYAVATKEKQAKIVWSEAKRMVKKSPVLSKRIKALVKELNADFNDSTFQPVGSDSDTLDGLNVHGASLDEIHAWKDKNLY
DVIVDGTSAREQPLILMITTAGTVRESVYDMKYEEAERLLLSLDDEKEYTDPTFLPIIYELDSRKEWTDPKCWKKANPGL
GTIKKIDNLQTKVNKAQANPLLVKNLLTKDFNVRETSSEAWLTFEQLNNKQTFDVMELKPNYGIGGTDLSETTDLTAAKV
IFMLPNDINVYVLQMYWLPEELLEQRSKEDKIPYDLWHEAGYLRTTPGNSIHPKFVTEWFLEIRDEYGIYLPWIGYDRWS
AKYWVEEMQGYFGKEAMVPVAQGKQTLSMPMKLLGADLEAKRIIYNNNPIDKWCLSNTAIDIDKNLNIQPDKTNNQRRRI
DGTAALLDAYVVLQEKKNDYLNMI

Sequences:

>Translated_504_residues
MEFIENFCKHSKGKWAGKPIDLELWQKAFIGSLFGFIHKIDGTRKYREALLIVARKNGKSTLSSGICLYLQIADGEGGAE
VYAVATKEKQAKIVWSEAKRMVKKSPVLSKRIKALVKELNADFNDSTFQPVGSDSDTLDGLNVHGASLDEIHAWKDKNLY
DVIVDGTSAREQPLILMITTAGTVRESVYDMKYEEAERLLLSLDDEKEYTDPTFLPIIYELDSRKEWTDPKCWKKANPGL
GTIKKIDNLQTKVNKAQANPLLVKNLLTKDFNVRETSSEAWLTFEQLNNKQTFDVMELKPNYGIGGTDLSETTDLTAAKV
IFMLPNDINVYVLQMYWLPEELLEQRSKEDKIPYDLWHEAGYLRTTPGNSIHPKFVTEWFLEIRDEYGIYLPWIGYDRWS
AKYWVEEMQGYFGKEAMVPVAQGKQTLSMPMKLLGADLEAKRIIYNNNPIDKWCLSNTAIDIDKNLNIQPDKTNNQRRRI
DGTAALLDAYVVLQEKKNDYLNMI
>Mature_504_residues
MEFIENFCKHSKGKWAGKPIDLELWQKAFIGSLFGFIHKIDGTRKYREALLIVARKNGKSTLSSGICLYLQIADGEGGAE
VYAVATKEKQAKIVWSEAKRMVKKSPVLSKRIKALVKELNADFNDSTFQPVGSDSDTLDGLNVHGASLDEIHAWKDKNLY
DVIVDGTSAREQPLILMITTAGTVRESVYDMKYEEAERLLLSLDDEKEYTDPTFLPIIYELDSRKEWTDPKCWKKANPGL
GTIKKIDNLQTKVNKAQANPLLVKNLLTKDFNVRETSSEAWLTFEQLNNKQTFDVMELKPNYGIGGTDLSETTDLTAAKV
IFMLPNDINVYVLQMYWLPEELLEQRSKEDKIPYDLWHEAGYLRTTPGNSIHPKFVTEWFLEIRDEYGIYLPWIGYDRWS
AKYWVEEMQGYFGKEAMVPVAQGKQTLSMPMKLLGADLEAKRIIYNNNPIDKWCLSNTAIDIDKNLNIQPDKTNNQRRRI
DGTAALLDAYVVLQEKKNDYLNMI

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 57714; Mature: 57714

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFIENFCKHSKGKWAGKPIDLELWQKAFIGSLFGFIHKIDGTRKYREALLIVARKNGKS
CHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHEEEEEEEECCCCC
TLSSGICLYLQIADGEGGAEVYAVATKEKQAKIVWSEAKRMVKKSPVLSKRIKALVKELN
HHCCCCEEEEEEECCCCCCEEEEEEECCCCHHEEHHHHHHHHHHCCHHHHHHHHHHHHHC
ADFNDSTFQPVGSDSDTLDGLNVHGASLDEIHAWKDKNLYDVIVDGTSAREQPLILMITT
CCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEEC
AGTVRESVYDMKYEEAERLLLSLDDEKEYTDPTFLPIIYELDSRKEWTDPKCWKKANPGL
CCHHHHHHHHCCHHHHHHHEEECCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHCCCCCC
GTIKKIDNLQTKVNKAQANPLLVKNLLTKDFNVRETSSEAWLTFEQLNNKQTFDVMELKP
CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCCCEEEHHHCCCCCCEEEEEECC
NYGIGGTDLSETTDLTAAKVIFMLPNDINVYVLQMYWLPEELLEQRSKEDKIPYDLWHEA
CCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCHHHHHHCCCCCCCCHHHHHCC
GYLRTTPGNSIHPKFVTEWFLEIRDEYGIYLPWIGYDRWSAKYWVEEMQGYFGKEAMVPV
CCEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCH
AQGKQTLSMPMKLLGADLEAKRIIYNNNPIDKWCLSNTAIDIDKNLNIQPDKTNNQRRRI
HCCCHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHCCCEEEECCCCCCCCCCCCCCHHHC
DGTAALLDAYVVLQEKKNDYLNMI
CHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MEFIENFCKHSKGKWAGKPIDLELWQKAFIGSLFGFIHKIDGTRKYREALLIVARKNGKS
CHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHEEEEEEEECCCCC
TLSSGICLYLQIADGEGGAEVYAVATKEKQAKIVWSEAKRMVKKSPVLSKRIKALVKELN
HHCCCCEEEEEEECCCCCCEEEEEEECCCCHHEEHHHHHHHHHHCCHHHHHHHHHHHHHC
ADFNDSTFQPVGSDSDTLDGLNVHGASLDEIHAWKDKNLYDVIVDGTSAREQPLILMITT
CCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEEC
AGTVRESVYDMKYEEAERLLLSLDDEKEYTDPTFLPIIYELDSRKEWTDPKCWKKANPGL
CCHHHHHHHHCCHHHHHHHEEECCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHCCCCCC
GTIKKIDNLQTKVNKAQANPLLVKNLLTKDFNVRETSSEAWLTFEQLNNKQTFDVMELKP
CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEECCCCCEEEHHHCCCCCCEEEEEECC
NYGIGGTDLSETTDLTAAKVIFMLPNDINVYVLQMYWLPEELLEQRSKEDKIPYDLWHEA
CCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCHHHHHHCCCCCCCCHHHHHCC
GYLRTTPGNSIHPKFVTEWFLEIRDEYGIYLPWIGYDRWSAKYWVEEMQGYFGKEAMVPV
CCEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCH
AQGKQTLSMPMKLLGADLEAKRIIYNNNPIDKWCLSNTAIDIDKNLNIQPDKTNNQRRRI
HCCCHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHCCCEEEECCCCCCCCCCCCCCHHHC
DGTAALLDAYVVLQEKKNDYLNMI
CHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]