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The map label for this gene is ykkC [H]

Identifier: 227816297

GI number: 227816297

Start: 3396988

End: 3397332

Strand: Reverse

Name: ykkC [H]

Synonym: BAMEG_3725

Alternate gene names: 227816297

Gene position: 3397332-3396988 (Counterclockwise)

Preceding gene: 227816298

Following gene: 227816296

Centisome position: 64.96

GC content: 38.26

Gene sequence:

>345_bases
ATGAAAAATAAAGCTTGGTTATATGTCATATTAACATGTATCTTTGAAGTTTTTTGGGTGTTTGGTTTTAATACGGCCAA
TACGTGGTGGCATTGGATTATCATTTTAGGAGTTATCGCTGTTGATTTTCACTTCCTTTCTAAAGCGTGTGAACATCTTG
CAACAGGAACCGTATATGCTGTGTTCGCCGGAGCTGGTACGGTAGGTACGTTTTTAATGGATGTATTTCTTTTCGGCGGA
AGTTTCAGTGTAGGGAAATTATTCTTTATCGTGATGGTTGTAGCTGGCGTTATCGGTTTAAAGCTAGCTGATAATAAAGA
AGAAACTGTGGAAGGAGCTGCTTAA

Upstream 100 bases:

>100_bases
TGGTAAATGAGGATGATAGTTGTTTTTATATAGTAGAGATGAAAGAATATATTTTTTTAAAACAAAAATGACTGATAGTC
AGTCATAAGAGGTGAGAGGT

Downstream 100 bases:

>100_bases
AGATGGGTTGGTTTTTCGTATTTTGTGCTGCAATTAGTGAAATAGTCGGTGTGATTGGCCTTAAAATGTATAGTAAAGAT
AAAACGTTAGCAAATGGGGC

Product: putative sugE protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MKNKAWLYVILTCIFEVFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYAVFAGAGTVGTFLMDVFLFGG
SFSVGKLFFIVMVVAGVIGLKLADNKEETVEGAA

Sequences:

>Translated_114_residues
MKNKAWLYVILTCIFEVFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYAVFAGAGTVGTFLMDVFLFGG
SFSVGKLFFIVMVVAGVIGLKLADNKEETVEGAA
>Mature_114_residues
MKNKAWLYVILTCIFEVFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYAVFAGAGTVGTFLMDVFLFGG
SFSVGKLFFIVMVVAGVIGLKLADNKEETVEGAA

Specific function: Part of a multidrug efflux pump. Confers resistance to a broad range of toxic compounds such as cationic dyes, neutral and anionic antimicrobials [H]

COG id: COG2076

COG function: function code P; Membrane transporters of cations and cationic drugs

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small multidrug resistance (SMR) protein family. YkkC/ykkD (TC 2.A.7.1.5) subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000390 [H]

Pfam domain/function: PF00893 Multi_Drug_Res [H]

EC number: NA

Molecular weight: Translated: 12548; Mature: 12548

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKAWLYVILTCIFEVFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYA
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VFAGAGTVGTFLMDVFLFGGSFSVGKLFFIVMVVAGVIGLKLADNKEETVEGAA
HHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC
>Mature Secondary Structure
MKNKAWLYVILTCIFEVFWVFGFNTANTWWHWIIILGVIAVDFHFLSKACEHLATGTVYA
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
VFAGAGTVGTFLMDVFLFGGSFSVGKLFFIVMVVAGVIGLKLADNKEETVEGAA
HHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA