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The map label for this gene is appB [H]

Identifier: 227816226

GI number: 227816226

Start: 3314291

End: 3315238

Strand: Reverse

Name: appB [H]

Synonym: BAMEG_3653

Alternate gene names: 227816226

Gene position: 3315238-3314291 (Counterclockwise)

Preceding gene: 227816227

Following gene: 227816225

Centisome position: 63.39

GC content: 36.29

Gene sequence:

>948_bases
GTGTATAAAGTAATTGCGAAGAGGCTTTTAAATGCAATTCCGCTTTTATTTGTTATTTCTATTATTTCTTTTCTATTAAT
AAAACTAGCACCAGGAGATCCTGTGCGAAACTTTGTCACGCCGAATATGAGTCCAATTGATGTTGAGCGTATTCGCAAAA
GTTTAGGACTAGACCAACCAATTTATATGCAGTATATTTTATGGCTGAAAAATATTTTAACAGGGAACTTTGGTTACTCA
CTGCAAAATCATCGTCCTGTTTTAGATCTTATTGTAGAAAGATTACCAGCGACAATCGGTTTAATGGGATCTTCTTTACT
CGTCTCATTTGTGATCGCAATCCCACTTGGGTTATTTACAGGTGTGAAAAAGAATTCTATCTTTGATCGCATTGTAAACT
TTATTTCCTATGTAGGAATCTCAATGCTAGTCTTTTGGTTCGCGTTACTATTAATCTACTTGTTCTCTTTAAAGCTGAAT
CTTCTTCCGAGTATGGGTATGCGTACGGTTGGCCAAGATTCCGTCTGGGATATTGTCCAACATGGTATTTTACCTTGCAT
GGTGCTTGCGTTCCAAAACATCTCTGTCTATATGAGATATATTCGCTCAAGTACGATTCAGCAATTAGAAGACTACGTAC
AAATTCAATATGCGTACGGTGCTTCAAAGAAAACAGTTTTATTTAATCACGTGCTTCGAAATGTATTAATACCGATCATT
ACAATTTTCGGATTATCTATTCCAAGTTTAGTGGGCGGAGCGTTTATTACGGAAACAGTATTTTCATGGCCGGGTCTTGG
TTCACTTGGGGTAAATGCTATTTTTAGATTTGATTATCCGATTATCATGGCAATTACATTATTATCATCATTCATGTTAA
TTCTCGGTAACTTAATTGCTGATATTTTATATGGCGTAGTAGATCCGCGCATTCGAATGAGGGGGTGA

Upstream 100 bases:

>100_bases
CAATGTTTGAAGATGTATCTAAGATTTATGAAGTGAAATAAGAAACAAACAGTAAAGAAGCTGGTGGAAATCAGCTTCTT
TAGCTTGAGGGGGGAAGTTT

Downstream 100 bases:

>100_bases
TTTGGAATGAATAATAGGAGATTTCAAACGATAAAGCATAGTTTTACAAAAAATAAGTTTGTTGCAATGGGAGTTATTAT
ACTTGCCGTTTTAACGGTCG

Product: oligopeptide ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQPIYMQYILWLKNILTGNFGYS
LQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFTGVKKNSIFDRIVNFISYVGISMLVFWFALLLIYLFSLKLN
LLPSMGMRTVGQDSVWDIVQHGILPCMVLAFQNISVYMRYIRSSTIQQLEDYVQIQYAYGASKKTVLFNHVLRNVLIPII
TIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVVDPRIRMRG

Sequences:

>Translated_315_residues
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQPIYMQYILWLKNILTGNFGYS
LQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFTGVKKNSIFDRIVNFISYVGISMLVFWFALLLIYLFSLKLN
LLPSMGMRTVGQDSVWDIVQHGILPCMVLAFQNISVYMRYIRSSTIQQLEDYVQIQYAYGASKKTVLFNHVLRNVLIPII
TIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVVDPRIRMRG
>Mature_315_residues
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQPIYMQYILWLKNILTGNFGYS
LQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFTGVKKNSIFDRIVNFISYVGISMLVFWFALLLIYLFSLKLN
LLPSMGMRTVGQDSVWDIVQHGILPCMVLAFQNISVYMRYIRSSTIQQLEDYVQIQYAYGASKKTVLFNHVLRNVLIPII
TIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIADILYGVVDPRIRMRG

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=315, Percent_Identity=39.3650793650794, Blast_Score=219, Evalue=2e-58,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=37.3417721518987, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=35.207100591716, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI1787761, Length=335, Percent_Identity=34.3283582089552, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1787497, Length=316, Percent_Identity=30.0632911392405, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=31.9852941176471, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788504, Length=357, Percent_Identity=28.2913165266106, Blast_Score=125, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35399; Mature: 35399

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCH
IYMQYILWLKNILTGNFGYSLQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFT
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVKKNSIFDRIVNFISYVGISMLVFWFALLLIYLFSLKLNLLPSMGMRTVGQDSVWDIVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
HGILPCMVLAFQNISVYMRYIRSSTIQQLEDYVQIQYAYGASKKTVLFNHVLRNVLIPII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
DILYGVVDPRIRMRG
HHHHHHHCCCHHCCC
>Mature Secondary Structure
MYKVIAKRLLNAIPLLFVISIISFLLIKLAPGDPVRNFVTPNMSPIDVERIRKSLGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHHCCCCCH
IYMQYILWLKNILTGNFGYSLQNHRPVLDLIVERLPATIGLMGSSLLVSFVIAIPLGLFT
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVKKNSIFDRIVNFISYVGISMLVFWFALLLIYLFSLKLNLLPSMGMRTVGQDSVWDIVQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
HGILPCMVLAFQNISVYMRYIRSSTIQQLEDYVQIQYAYGASKKTVLFNHVLRNVLIPII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TIFGLSIPSLVGGAFITETVFSWPGLGSLGVNAIFRFDYPIIMAITLLSSFMLILGNLIA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
DILYGVVDPRIRMRG
HHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]