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The map label for this gene is oppD [C]

Identifier: 227816223

GI number: 227816223

Start: 3312414

End: 3312914

Strand: Reverse

Name: oppD [C]

Synonym: BAMEG_3650

Alternate gene names: 227816223

Gene position: 3312914-3312414 (Counterclockwise)

Preceding gene: 227816224

Following gene: 227816222

Centisome position: 63.34

GC content: 43.11

Gene sequence:

>501_bases
ATGATTGCGATGGCGATGTCTTGTAATCCAGATCTTCTCATTGCGGATGAACCGACGACAGCGCTTGATGTAACGATACA
AGCGCAAATACTAGACTTAATGAAAAACTTAAAAAATGAAACGAATATGGCGCTACTTCTTATTACGCATGATTTAGGAA
TAGTCGCGCAAAACTGTACACGCGTTATCGTTATGTATGGCGGGCTTATTATGGAAGAAGGACCTGTACTTGATATTTTC
CAATCACCGAATCATCCATATACGAAAGGGCTATTAAACTCTTTGCCAAAAATATCGAACGGCGTAAAAGAAAGACTTGC
GCCAATTCAAGGTGTAACGCCAAACTTATTACATCCGCCGAAAGGTTGCCCATTCGCAGAGCGTTGCCCGCATGCGATGG
ACATTTGTGAAAAAGAACGTCCGCCGTATTTTGAAATCGGAGACGGAAGGCGTTCCATGTGCTGGTTAAATGATAGGGCG
GTAGGTGATTCACATGCATGA

Upstream 100 bases:

>100_bases
GATCGCAATCAACTTGTTAAAGCAAGTTGGCCTTTCGTCACCAGAATAAAGGGTAAAACAATATCCGCATGAACTAAGCG
GTGGTATGAAGCAGCGGGTT

Downstream 100 bases:

>100_bases
AGAAAACTTAATTGAAGTGCGGAACTCAAAAAAGTATTTTCCTATTAAAAAAGGACCATTCGGCAGAAAAACAGAGCAAT
TAAAAGCAGTTGATGACCTA

Product: dipeptide transport ATP-binding protein DppD

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMYGGLIMEEGPVLDIF
QSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLHPPKGCPFAERCPHAMDICEKERPPYFEIGDGRRSMCWLNDRA
VGDSHA

Sequences:

>Translated_166_residues
MIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMYGGLIMEEGPVLDIF
QSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLHPPKGCPFAERCPHAMDICEKERPPYFEIGDGRRSMCWLNDRA
VGDSHA
>Mature_166_residues
MIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCTRVIVMYGGLIMEEGPVLDIF
QSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLHPPKGCPFAERCPHAMDICEKERPPYFEIGDGRRSMCWLNDRA
VGDSHA

Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI48994883, Length=155, Percent_Identity=54.8387096774194, Blast_Score=168, Evalue=1e-43,
Organism=Escherichia coli, GI1789963, Length=154, Percent_Identity=53.2467532467532, Blast_Score=167, Evalue=3e-43,
Organism=Escherichia coli, GI1787759, Length=163, Percent_Identity=46.6257668711656, Blast_Score=141, Evalue=2e-35,
Organism=Escherichia coli, GI145693107, Length=128, Percent_Identity=51.5625, Blast_Score=126, Evalue=8e-31,
Organism=Escherichia coli, GI1787758, Length=154, Percent_Identity=40.2597402597403, Blast_Score=120, Evalue=5e-29,
Organism=Escherichia coli, GI1789962, Length=158, Percent_Identity=36.7088607594937, Blast_Score=116, Evalue=6e-28,
Organism=Escherichia coli, GI1787500, Length=143, Percent_Identity=41.958041958042, Blast_Score=113, Evalue=5e-27,
Organism=Escherichia coli, GI1788506, Length=96, Percent_Identity=56.25, Blast_Score=108, Evalue=1e-25,
Organism=Escherichia coli, GI1787548, Length=138, Percent_Identity=39.1304347826087, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1789890, Length=94, Percent_Identity=45.7446808510638, Blast_Score=87, Evalue=4e-19,
Organism=Escherichia coli, GI48994997, Length=94, Percent_Identity=40.4255319148936, Blast_Score=82, Evalue=1e-17,
Organism=Escherichia coli, GI1786398, Length=93, Percent_Identity=34.4086021505376, Blast_Score=66, Evalue=9e-13,
Organism=Escherichia coli, GI1787547, Length=91, Percent_Identity=30.7692307692308, Blast_Score=64, Evalue=4e-12,
Organism=Escherichia coli, GI1789891, Length=71, Percent_Identity=43.6619718309859, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1788644, Length=92, Percent_Identity=33.695652173913, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1786872, Length=94, Percent_Identity=35.1063829787234, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1787089, Length=92, Percent_Identity=35.8695652173913, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 18292; Mature: 18292

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
9.0 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCT
CEEEEECCCCCEEEECCCCCEEEEEHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHH
RVIVMYGGLIMEEGPVLDIFQSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLHPP
EEEHHHCCEEECCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCC
KGCPFAERCPHAMDICEKERPPYFEIGDGRRSMCWLNDRAVGDSHA
CCCCHHHHCCHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MIAMAMSCNPDLLIADEPTTALDVTIQAQILDLMKNLKNETNMALLLITHDLGIVAQNCT
CEEEEECCCCCEEEECCCCCEEEEEHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHH
RVIVMYGGLIMEEGPVLDIFQSPNHPYTKGLLNSLPKISNGVKERLAPIQGVTPNLLHPP
EEEHHHCCEEECCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCC
KGCPFAERCPHAMDICEKERPPYFEIGDGRRSMCWLNDRAVGDSHA
CCCCHHHHCCHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424 [H]