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The map label for this gene is algU [H]

Identifier: 227816114

GI number: 227816114

Start: 3218126

End: 3218659

Strand: Reverse

Name: algU [H]

Synonym: BAMEG_3540

Alternate gene names: 227816114

Gene position: 3218659-3218126 (Counterclockwise)

Preceding gene: 227816115

Following gene: 227816113

Centisome position: 61.54

GC content: 34.27

Gene sequence:

>534_bases
GTGGATGAATTAACGGTAGAAGCGTTTGAAATAGAAGATAAGGAGGACCTTATCGACGAAATCATGAACAAGTATGGACA
AGAAGTCTTACAGCTTGTGTATTCATATGTGAATAATAAAGAGGTCGCGGAGGATGTAACGCAAGATATATTTGTGAAAT
GCTATAAATCTCTTCATACATATAAAGGGAATTCGAACTTAAAAACATGGTTATGGAGAATTGCGATTAATCATTGTAAG
GACTATTTAAAAAGTTGGTATAACAAAAAGGTCATCGTGACAGAGGATGACTTTACGTATATGGAGAGTCAAAAAGAAAG
TGTGGAACAAATAGTTATTCAAAATGCAGAGGATAGTAGGCTTGCTTCTGCAGTAATGAGTTTACCGATCAAATATCGAG
AAGTCATTTATCTATTTTATTATGAAGAGTTATCAATTAAAGAGATTGCTACGGTAATAGAAGTGAAGGAAAACACGATA
AAAACGAGGCTGAAAAAAGCAAAGGAGCTTTTGAAGAAAGGATTGGAGGAATAG

Upstream 100 bases:

>100_bases
TGTTTTATAAAAAATGTTATTATCAATTACATTTTTTTATTTATTTTATAAAACTTTTCCATACAGTGCGTCGTCTAATA
TATGGAAAGGAGGAAATGAT

Downstream 100 bases:

>100_bases
TCAAATGGAAGATCGATTAAAAGGCTTGCGAAAATCAATGGAGAACACAACTTTTAAACATTTGAGTTTTTCTGATCAGC
ACCAGAAGCGGGTGCGTGAA

Product: RNA polymerase factor sigma C

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MDELTVEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCK
DYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKENTI
KTRLKKAKELLKKGLEE

Sequences:

>Translated_177_residues
MDELTVEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCK
DYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKENTI
KTRLKKAKELLKKGLEE
>Mature_177_residues
MDELTVEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCK
DYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKENTI
KTRLKKAKELLKKGLEE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=156, Percent_Identity=30.1282051282051, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20974; Mature: 20974

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELTVEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHT
CCCCEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
YKGNSNLKTWLWRIAINHCKDYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSR
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCHHH
LASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKENTIKTRLKKAKELLKKGLEE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDELTVEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHT
CCCCEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
YKGNSNLKTWLWRIAINHCKDYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSR
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCHHH
LASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKENTIKTRLKKAKELLKKGLEE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]