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The map label for this gene is ydfL [H]

Identifier: 227816085

GI number: 227816085

Start: 3193415

End: 3194218

Strand: Reverse

Name: ydfL [H]

Synonym: BAMEG_3511

Alternate gene names: 227816085

Gene position: 3194218-3193415 (Counterclockwise)

Preceding gene: 227816087

Following gene: 227816084

Centisome position: 61.07

GC content: 29.35

Gene sequence:

>804_bases
TTGGAAAATTTATTTTCTATTGGTGAAGTTGCTAATATGAAAGGTGTTACAATAAAAGCTTTAAGATATTACCATCAAAC
AGGCATTCTTATCCCCGTATACATTGATACAAAAACGGGTTATAGATACTATTCGGTAGATCAATTTGTTTATATTGATA
TAATTAAAGTTTGTAGAGCTTTAGGAACGAGTACGAAAGAACTGCAACAAATTTTTACTGAAAAGAATATGGATGAATTA
TTAAAATTTTTAGCATTAAAAAGAGAAGAAACTGAGCAAAAAATAAAAGAGATGCAAGCAGTCATTCATACGATTGATAA
ACTAGATAATAGTGTACAAGTCGCCAAAAAGGTACTAGTACATAATCAAATAACAAGACAGTATTTTGAGCAACGTTATA
TCGTCACTGCTCCATGTAAAGACGTGGGTAATTTTAAAGAATTCCTTTATTATTCAGATGTAGATAAAATAATTCAGGAG
AGAAATTTAGAAACAACGATGGAGATTGGTATAGCATATAGCATTCATTCAAAATACAGGTTTGAACCAAAGTATGCTTT
TTCTGTGTTATGTAAATATGATTACACAGAGAACGAGCAAAATATAGATATATTACCAGAAGGTAACTATTTGACACTGG
CCTATAAAAAGAATAATAAAGAAGAAAGTATGGAGAAATTAAAAGATTATATAGAGAAAAATAATGTAACAATCAAAAAT
TGCATTGAAGTGGAATTGTTAGATGAGTTTTTTAGTACGGATTCTTACAGTTGCCAAATGCAATTGCTTATAGAGAAGGA
GTGA

Upstream 100 bases:

>100_bases
TGTTGCATGATCTATTTTTTATTATCCTTCTATTAACTTTAACGATAAAATAATAATGTCTCCCTTAAGAGGAGAGTCAA
GAATAAGGGGGCAATATAAA

Downstream 100 bases:

>100_bases
AAACGCACTTTAGAGCATACTCAGAAATAATATAAACGAGAAGATGATGAGTACAATTGTTGAAAAAGCATCCTCAAAGT
ATGTGAGGATGCTTTTTTAG

Product: transcriptional regulator, MerR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MENLFSIGEVANMKGVTIKALRYYHQTGILIPVYIDTKTGYRYYSVDQFVYIDIIKVCRALGTSTKELQQIFTEKNMDEL
LKFLALKREETEQKIKEMQAVIHTIDKLDNSVQVAKKVLVHNQITRQYFEQRYIVTAPCKDVGNFKEFLYYSDVDKIIQE
RNLETTMEIGIAYSIHSKYRFEPKYAFSVLCKYDYTENEQNIDILPEGNYLTLAYKKNNKEESMEKLKDYIEKNNVTIKN
CIEVELLDEFFSTDSYSCQMQLLIEKE

Sequences:

>Translated_267_residues
MENLFSIGEVANMKGVTIKALRYYHQTGILIPVYIDTKTGYRYYSVDQFVYIDIIKVCRALGTSTKELQQIFTEKNMDEL
LKFLALKREETEQKIKEMQAVIHTIDKLDNSVQVAKKVLVHNQITRQYFEQRYIVTAPCKDVGNFKEFLYYSDVDKIIQE
RNLETTMEIGIAYSIHSKYRFEPKYAFSVLCKYDYTENEQNIDILPEGNYLTLAYKKNNKEESMEKLKDYIEKNNVTIKN
CIEVELLDEFFSTDSYSCQMQLLIEKE
>Mature_267_residues
MENLFSIGEVANMKGVTIKALRYYHQTGILIPVYIDTKTGYRYYSVDQFVYIDIIKVCRALGTSTKELQQIFTEKNMDEL
LKFLALKREETEQKIKEMQAVIHTIDKLDNSVQVAKKVLVHNQITRQYFEQRYIVTAPCKDVGNFKEFLYYSDVDKIIQE
RNLETTMEIGIAYSIHSKYRFEPKYAFSVLCKYDYTENEQNIDILPEGNYLTLAYKKNNKEESMEKLKDYIEKNNVTIKN
CIEVELLDEFFSTDSYSCQMQLLIEKE

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 31520; Mature: 31520

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLFSIGEVANMKGVTIKALRYYHQTGILIPVYIDTKTGYRYYSVDQFVYIDIIKVCRA
CCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEEEECHHHHHHHHHHHHH
LGTSTKELQQIFTEKNMDELLKFLALKREETEQKIKEMQAVIHTIDKLDNSVQVAKKVLV
HCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
HNQITRQYFEQRYIVTAPCKDVGNFKEFLYYSDVDKIIQERNLETTMEIGIAYSIHSKYR
HHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEECCCEE
FEPKYAFSVLCKYDYTENEQNIDILPEGNYLTLAYKKNNKEESMEKLKDYIEKNNVTIKN
CCCCCEEEEEEECCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHH
CIEVELLDEFFSTDSYSCQMQLLIEKE
HHHHHHHHHHHCCCCCCEEEEEEEECC
>Mature Secondary Structure
MENLFSIGEVANMKGVTIKALRYYHQTGILIPVYIDTKTGYRYYSVDQFVYIDIIKVCRA
CCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEEEECHHHHHHHHHHHHH
LGTSTKELQQIFTEKNMDELLKFLALKREETEQKIKEMQAVIHTIDKLDNSVQVAKKVLV
HCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
HNQITRQYFEQRYIVTAPCKDVGNFKEFLYYSDVDKIIQERNLETTMEIGIAYSIHSKYR
HHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEECCCEE
FEPKYAFSVLCKYDYTENEQNIDILPEGNYLTLAYKKNNKEESMEKLKDYIEKNNVTIKN
CCCCCEEEEEEECCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHH
CIEVELLDEFFSTDSYSCQMQLLIEKE
HHHHHHHHHHHCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]