Click here to switch to the map view.

The map label for this gene is algU [H]

Identifier: 227815388

GI number: 227815388

Start: 2565591

End: 2566073

Strand: Direct

Name: algU [H]

Synonym: BAMEG_2801

Alternate gene names: 227815388

Gene position: 2565591-2566073 (Clockwise)

Preceding gene: 227815381

Following gene: 227815389

Centisome position: 49.05

GC content: 33.75

Gene sequence:

>483_bases
GTGCAAACATATCGTCATTATATTTTTCAAGTTATCTTTTCTATTTTAAGACATGAAGAAGATGCGAAAGATGTTACACA
AGAAGTATTCGTAAAAATTCACGCCTCTCTCCCTAATTATCAATTTCGCGGATTGAAAACATGGATGGCTCGAATTGCCA
CCAATCACGCCATTGATTATAAGAGAAAGAAAGCTAGAGAAAATGAAGAACTCTCCTTATGTAAAGAAACTGAGGAAAAT
ATAAAATCCTCTCATAATATTGAGGATTTATTATTGACGAAAGAGCAAAAATTACTCATCGCTCAAAAACTGAGAGAACT
TCCCGAAAATTACCGTGACGTCGTTCTCGCACATTACTTAGAAGAAAAAAGTTATCAAGAAATTGCTTTGCAGGAAAAAA
TCGAAGTAAAAACAGTCGAAATGAAACTGTATCGAGCAAGAAAATGGATTAAAAAACATTGGAAGGAGGAAGAGTTTCTA
TGA

Upstream 100 bases:

>100_bases
TATATAATAGAATGCGTCAAAAAGGAGGGAGAGACCCATTGAGGAAAAACAATTAATTGAAAAAGCACAACAAGGAAGCG
AACATGCTTTTCGTATCCTT

Downstream 100 bases:

>100_bases
TGCATTATTCAAAAGAAGATTGGCGCAATTATACACTAGATTTTATAGAAAGCAATGAACGTGAATCTATGGAAGAACAC
CTTTATGAATGTGATCATTG

Product: RNA polymerase sigma factor SigW

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MQTYRHYIFQVIFSILRHEEDAKDVTQEVFVKIHASLPNYQFRGLKTWMARIATNHAIDYKRKKARENEELSLCKETEEN
IKSSHNIEDLLLTKEQKLLIAQKLRELPENYRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRARKWIKKHWKEEEFL

Sequences:

>Translated_160_residues
MQTYRHYIFQVIFSILRHEEDAKDVTQEVFVKIHASLPNYQFRGLKTWMARIATNHAIDYKRKKARENEELSLCKETEEN
IKSSHNIEDLLLTKEQKLLIAQKLRELPENYRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRARKWIKKHWKEEEFL
>Mature_160_residues
MQTYRHYIFQVIFSILRHEEDAKDVTQEVFVKIHASLPNYQFRGLKTWMARIATNHAIDYKRKKARENEELSLCKETEEN
IKSSHNIEDLLLTKEQKLLIAQKLRELPENYRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRARKWIKKHWKEEEFL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=139, Percent_Identity=32.3741007194245, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19465; Mature: 19465

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTYRHYIFQVIFSILRHEEDAKDVTQEVFVKIHASLPNYQFRGLKTWMARIATNHAIDY
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
KRKKARENEELSLCKETEENIKSSHNIEDLLLTKEQKLLIAQKLRELPENYRDVVLAHYL
HHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEKSYQEIALQEKIEVKTVEMKLYRARKWIKKHWKEEEFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQTYRHYIFQVIFSILRHEEDAKDVTQEVFVKIHASLPNYQFRGLKTWMARIATNHAIDY
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
KRKKARENEELSLCKETEENIKSSHNIEDLLLTKEQKLLIAQKLRELPENYRDVVLAHYL
HHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEKSYQEIALQEKIEVKTVEMKLYRARKWIKKHWKEEEFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]