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The map label for this gene is yodJ [H]

Identifier: 227814664

GI number: 227814664

Start: 1889462

End: 1890193

Strand: Reverse

Name: yodJ [H]

Synonym: BAMEG_2074

Alternate gene names: 227814664

Gene position: 1890193-1889462 (Counterclockwise)

Preceding gene: 227814666

Following gene: 227814662

Centisome position: 36.14

GC content: 34.56

Gene sequence:

>732_bases
ATGAGAATTAAATTAGTAGGGATTTTTACTTGTATGATTGTGATACTTGGTATCTTTATCGTTTATACCAATCAATCTAT
TGGTAAAGAACCAAGAAAAACAAACTATGAAACTCGTGAAAACTCCATAAATAAAGAGAAAAATAGTACTTCAAATAACA
TAGCAAGTTCTTTTGCTAGTGTACAAGCTGTAGTTAATAAAGAATATGGATTGCCTGAAGACTATAAACCGGAAGATTTA
GTTGTACCAAATGTACCATTCTCATTCAGTGGAACGCTAGAAAAGAGTTACCTTCGTAAAGAGGCAGCAGAAGCACTAGA
AAGGTTATTTGATTTAGCAAATAAAGAAGGAATCCAGTTGAATGCTGTTTCTGGCTTTCGCTCCTATGATTATCAAAAAA
AACTGTATGCAAACAACGTGAAAAGAAAAGGACAAGAGCATACGGATCGCTTCTCGGCAAAGCCAGGACATAGTGAACAT
CAAACAGGATTAACGATGGATGTTTCTTCAAAAAGTGCAAATAATGAGCTAGAGTTAACCTTTGCGAATACGAAAGAAGG
AAAATGGCTGAAAGAAAATGCGCATCGTGCAGGTTTTATCATTCGTTATCCAAAAGGCAAAGAGAGTATTACTGGATATG
CATATGAACCGTGGCATATTCGCTATGTAGGGGATATTGCTGAAAGTATATATAAGAAAAAACTGACTTTAGAAGAATAT
ATGAATCTGTAA

Upstream 100 bases:

>100_bases
ATATGTTAAGAACAAAAGTTCACTTCAAATTAATATGAATTTGATATGGTTGTAGTATTATAAACGAGAAATATTAAGAG
TGGCAGGAAGGAAATGAATA

Downstream 100 bases:

>100_bases
AAATAGAATTGTAAACGATACTGCTATTTGAAAGATGAAAGAGGAGCGATTCATATATTTACAGTAATGTGAGATGTATG
ATCTTACGTGAGGTGCAGAA

Product: D-alanyl-D-alanine carboxypeptidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MRIKLVGIFTCMIVILGIFIVYTNQSIGKEPRKTNYETRENSINKEKNSTSNNIASSFASVQAVVNKEYGLPEDYKPEDL
VVPNVPFSFSGTLEKSYLRKEAAEALERLFDLANKEGIQLNAVSGFRSYDYQKKLYANNVKRKGQEHTDRFSAKPGHSEH
QTGLTMDVSSKSANNELELTFANTKEGKWLKENAHRAGFIIRYPKGKESITGYAYEPWHIRYVGDIAESIYKKKLTLEEY
MNL

Sequences:

>Translated_243_residues
MRIKLVGIFTCMIVILGIFIVYTNQSIGKEPRKTNYETRENSINKEKNSTSNNIASSFASVQAVVNKEYGLPEDYKPEDL
VVPNVPFSFSGTLEKSYLRKEAAEALERLFDLANKEGIQLNAVSGFRSYDYQKKLYANNVKRKGQEHTDRFSAKPGHSEH
QTGLTMDVSSKSANNELELTFANTKEGKWLKENAHRAGFIIRYPKGKESITGYAYEPWHIRYVGDIAESIYKKKLTLEEY
MNL
>Mature_243_residues
MRIKLVGIFTCMIVILGIFIVYTNQSIGKEPRKTNYETRENSINKEKNSTSNNIASSFASVQAVVNKEYGLPEDYKPEDL
VVPNVPFSFSGTLEKSYLRKEAAEALERLFDLANKEGIQLNAVSGFRSYDYQKKLYANNVKRKGQEHTDRFSAKPGHSEH
QTGLTMDVSSKSANNELELTFANTKEGKWLKENAHRAGFIIRYPKGKESITGYAYEPWHIRYVGDIAESIYKKKLTLEEY
MNL

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 27728; Mature: 27728

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIKLVGIFTCMIVILGIFIVYTNQSIGKEPRKTNYETRENSINKEKNSTSNNIASSFAS
CEEEEHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHH
VQAVVNKEYGLPEDYKPEDLVVPNVPFSFSGTLEKSYLRKEAAEALERLFDLANKEGIQL
HHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
NAVSGFRSYDYQKKLYANNVKRKGQEHTDRFSAKPGHSEHQTGLTMDVSSKSANNELELT
EEECCCHHCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEE
FANTKEGKWLKENAHRAGFIIRYPKGKESITGYAYEPWHIRYVGDIAESIYKKKLTLEEY
EECCCCCCHHHHCCCCCCEEEECCCCCCCCCCEEECCEEEEEHHHHHHHHHHHHCCHHHH
MNL
HCC
>Mature Secondary Structure
MRIKLVGIFTCMIVILGIFIVYTNQSIGKEPRKTNYETRENSINKEKNSTSNNIASSFAS
CEEEEHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHH
VQAVVNKEYGLPEDYKPEDLVVPNVPFSFSGTLEKSYLRKEAAEALERLFDLANKEGIQL
HHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
NAVSGFRSYDYQKKLYANNVKRKGQEHTDRFSAKPGHSEHQTGLTMDVSSKSANNELELT
EEECCCHHCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEE
FANTKEGKWLKENAHRAGFIIRYPKGKESITGYAYEPWHIRYVGDIAESIYKKKLTLEEY
EECCCCCCHHHHCCCCCCEEEECCCCCCCCCCEEECCEEEEEHHHHHHHHHHHHCCHHHH
MNL
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]