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The map label for this gene is yxdJ [H]

Identifier: 227814590

GI number: 227814590

Start: 1820301

End: 1821008

Strand: Reverse

Name: yxdJ [H]

Synonym: BAMEG_2000

Alternate gene names: 227814590

Gene position: 1821008-1820301 (Counterclockwise)

Preceding gene: 227814591

Following gene: 227814589

Centisome position: 34.82

GC content: 33.33

Gene sequence:

>708_bases
ATGGTTAAAATTATGATTGTAGAAGATGATATGAAAATAGCAGAATTATTATCAACACATGTTGCGAAATACGGGTATGA
AGGAATTATCGTATCGGATTTTCAAAATGTATTAAACATTTTTTTAGAAGAACAACCAGAGTTAGTTTTATTAGATATTA
ATTTACCGAGTTTTGATGGGTACTATTGGTGTCGTCAAATTCGTGGAGTTTCCACGTGTCCGATATTATTTATTTCAGCT
CGTGAAGGTACGATGGATCAAGTTATGGCGTTAGAAAACGGTGGTGATGATTTCATTTCAAAGCCATTCCATTACGAAGT
TGTAATGGCTAAAATTCGAAGTTATTTAAGACGTGCTTACGGAGATTATGCACCGAAAGTAGAAGAGCGGATGGTTGAGC
AACATGGTCTTTGTTTATATCCTGAAAGGCTTGTATTGAAGCTTAAGAATCAAGAAATTGACGTAACGAGAAATGAAGCT
ATTTTATTAGAAATGTTAATGAAAAATTATCCGCGTATTGTGAGTAGAGAAGTGTTGTTAAATAAATTATGGGATAGCGA
ATCCTATGTTGATGATAATACATTAAGTGTAAATACAACACGTGTGCGAAAAAAGTTAAAAACGTTACAGATTAAGGATC
CGATTGAAACGATTCGTAGTGTTGGATATAGACTACATATTACTTGGGATACTGGTATGGAAAAATGA

Upstream 100 bases:

>100_bases
TATAAAAGTATCCTTTTTAAATTTACGGATTAAATAAAAAAAGGTATTATTTATTTTATATAATTGTATATACGATTGCG
GATCGAAAAAGGAGTAAATA

Downstream 100 bases:

>100_bases
TAAGATTGTTTATTCGTGATCATATACCACTTATTTGTTTTACAGCAATCCAATTACTATCTATATTTCTCGTATATTGG
TTTGATGGACATAACCATAT

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MVKIMIVEDDMKIAELLSTHVAKYGYEGIIVSDFQNVLNIFLEEQPELVLLDINLPSFDGYYWCRQIRGVSTCPILFISA
REGTMDQVMALENGGDDFISKPFHYEVVMAKIRSYLRRAYGDYAPKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEA
ILLEMLMKNYPRIVSREVLLNKLWDSESYVDDNTLSVNTTRVRKKLKTLQIKDPIETIRSVGYRLHITWDTGMEK

Sequences:

>Translated_235_residues
MVKIMIVEDDMKIAELLSTHVAKYGYEGIIVSDFQNVLNIFLEEQPELVLLDINLPSFDGYYWCRQIRGVSTCPILFISA
REGTMDQVMALENGGDDFISKPFHYEVVMAKIRSYLRRAYGDYAPKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEA
ILLEMLMKNYPRIVSREVLLNKLWDSESYVDDNTLSVNTTRVRKKLKTLQIKDPIETIRSVGYRLHITWDTGMEK
>Mature_235_residues
MVKIMIVEDDMKIAELLSTHVAKYGYEGIIVSDFQNVLNIFLEEQPELVLLDINLPSFDGYYWCRQIRGVSTCPILFISA
REGTMDQVMALENGGDDFISKPFHYEVVMAKIRSYLRRAYGDYAPKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEA
ILLEMLMKNYPRIVSREVLLNKLWDSESYVDDNTLSVNTTRVRKKLKTLQIKDPIETIRSVGYRLHITWDTGMEK

Specific function: Probable member of the two-component regulatory system yxdK/yxdJ. Positively regulates the expression of the yxdLMyxeA operon by direct interaction with its promoter region. Could also indirectly regulate the expression of the dlt operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=226, Percent_Identity=30.9734513274336, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788394, Length=224, Percent_Identity=32.5892857142857, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87082012, Length=222, Percent_Identity=28.8288288288288, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790860, Length=225, Percent_Identity=28.8888888888889, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787375, Length=223, Percent_Identity=27.3542600896861, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786911, Length=230, Percent_Identity=28.695652173913, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1789402, Length=226, Percent_Identity=28.3185840707965, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789809, Length=229, Percent_Identity=27.9475982532751, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=27.7533039647577, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=28.1938325991189, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790552, Length=225, Percent_Identity=30.6666666666667, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=27.7533039647577, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787229, Length=210, Percent_Identity=29.5238095238095, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI145693140, Length=232, Percent_Identity=28.0172413793103, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1788550, Length=102, Percent_Identity=31.3725490196078, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27405; Mature: 27405

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKIMIVEDDMKIAELLSTHVAKYGYEGIIVSDFQNVLNIFLEEQPELVLLDINLPSFDG
CEEEEEEECCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
YYWCRQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSYLRRAY
HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
GDYAPKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRIVSREVLL
CCCCCHHHHHHHHHCCCEECCHHHEEEECCCEECCCCCHHHHHHHHHHHCHHHHHHHHHH
NKLWDSESYVDDNTLSVNTTRVRKKLKTLQIKDPIETIRSVGYRLHITWDTGMEK
HHHCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHCCEEEEEEECCCCCC
>Mature Secondary Structure
MVKIMIVEDDMKIAELLSTHVAKYGYEGIIVSDFQNVLNIFLEEQPELVLLDINLPSFDG
CEEEEEEECCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
YYWCRQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSYLRRAY
HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
GDYAPKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRIVSREVLL
CCCCCHHHHHHHHHCCCEECCHHHEEEECCCEECCCCCHHHHHHHHHHHCHHHHHHHHHH
NKLWDSESYVDDNTLSVNTTRVRKKLKTLQIKDPIETIRSVGYRLHITWDTGMEK
HHHCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7952181; 9384377 [H]