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The map label for this gene is ydhM [C]

Identifier: 227814272

GI number: 227814272

Start: 1542396

End: 1542986

Strand: Direct

Name: ydhM [C]

Synonym: BAMEG_1680

Alternate gene names: 227814272

Gene position: 1542396-1542986 (Clockwise)

Preceding gene: 227814271

Following gene: 227814273

Centisome position: 29.49

GC content: 30.63

Gene sequence:

>591_bases
ATGAAAAGAATATCAAAAGAACCAGATGTTAGAAGGCAAGAGTTGATGGATATTGGTTTTGAACTATATATGAAAAATGG
TATGAAAGGATTTGGCATAAAAGATGTTGTGAATCATGCAGGTGTAGCAACGGGCTTATTTTATTATTACTTCAAGTCTA
AAGAGAATTTTGTTGATGAAGTATTAAATGATTTTATTGTGAAAAATATGGAGTTAATTGAAGAAATACTTATTTCTAAT
GAACGGTCTGTCATGCAAAAGCTGAAAGATTCTCTAAATATATTTTGGACATTTATCGAAAAATTAGCACCTTATAAAAA
TTTGAGTTCGTTTCAGACGGAACAACATTTTCAACTGGAACAGAAATTATTTACGCGAATGCAGCCATTAATTCGACAAG
TAATCGAAGAAGGGGTGAAAACTGGGATTTTTAATACTGATAACTCATTATTAACATCAGGATTTATTTTATACGGTCTT
AGCAGTATTGCTCATTCAGAGGTGAATTTGAATCTAGACACGAAGCAAGAAATGATTAATTTAGTATTAAATACACTACG
ATACGATCAAAGTGAAGGAGAATGTATATGA

Upstream 100 bases:

>100_bases
TTACTCTTTTTTTTTTGAAACTAATATTGACTGAATATAGTTCAGTCGTTTATGATTGAATCAGATTCAGTCGAAGGTAA
AACATAGTAGGAGATGACCT

Downstream 100 bases:

>100_bases
AAATTATGATTGATGGAAACAATATTTCGAATGAACAACTTACAAAGTGGAAAAGAGAACGTATAAAAAAAGTTTTCAAT
ACATTAGGACATAAAGAGCC

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDEVLNDFIVKNMELIEEILISN
ERSVMQKLKDSLNIFWTFIEKLAPYKNLSSFQTEQHFQLEQKLFTRMQPLIRQVIEEGVKTGIFNTDNSLLTSGFILYGL
SSIAHSEVNLNLDTKQEMINLVLNTLRYDQSEGECI

Sequences:

>Translated_196_residues
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDEVLNDFIVKNMELIEEILISN
ERSVMQKLKDSLNIFWTFIEKLAPYKNLSSFQTEQHFQLEQKLFTRMQPLIRQVIEEGVKTGIFNTDNSLLTSGFILYGL
SSIAHSEVNLNLDTKQEMINLVLNTLRYDQSEGECI
>Mature_196_residues
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDEVLNDFIVKNMELIEEILISN
ERSVMQKLKDSLNIFWTFIEKLAPYKNLSSFQTEQHFQLEQKLFTRMQPLIRQVIEEGVKTGIFNTDNSLLTSGFILYGL
SSIAHSEVNLNLDTKQEMINLVLNTLRYDQSEGECI

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22814; Mature: 22814

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDE
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
VLNDFIVKNMELIEEILISNERSVMQKLKDSLNIFWTFIEKLAPYKNLSSFQTEQHFQLE
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QKLFTRMQPLIRQVIEEGVKTGIFNTDNSLLTSGFILYGLSSIAHSEVNLNLDTKQEMIN
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LVLNTLRYDQSEGECI
HHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDE
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
VLNDFIVKNMELIEEILISNERSVMQKLKDSLNIFWTFIEKLAPYKNLSSFQTEQHFQLE
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QKLFTRMQPLIRQVIEEGVKTGIFNTDNSLLTSGFILYGLSSIAHSEVNLNLDTKQEMIN
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LVLNTLRYDQSEGECI
HHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA