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The map label for this gene is rocC [H]

Identifier: 227814199

GI number: 227814199

Start: 1471816

End: 1473240

Strand: Reverse

Name: rocC [H]

Synonym: BAMEG_1607

Alternate gene names: 227814199

Gene position: 1473240-1471816 (Counterclockwise)

Preceding gene: 227814202

Following gene: 227814195

Centisome position: 28.17

GC content: 35.93

Gene sequence:

>1425_bases
ATGTCGCAAGTAAACAATACAAACAATGAATTAAAACGTACGATGAAAAGTAGACACTTATTCATGATTGCACTCGGTGG
TGTGATTGGAACGGAGTTATTTAACGGATCTGGCTTTATTATAAGTCAAGCTGGACCTGGTGGATCCGTACTTGCCTTTA
TGGCTGGTGGATTATTAATGTATTTCGTTATGCTTTGTCTTGGTGAACTCGCTGTAGCTATGCCTGTTTCAGGTTCTTTT
CAGGAATATGCAACTAAGTTCATCAATCCTGCAACTGGATTTACAATCGGCTGGTTATATTGGTTAAGCTGGGCAAATAC
GACCGGTCTTGAATTTACAACTGCTGGCATTACAATGCAGCGCTGGTTCCCTGATATTCCTGTTTGGGTTTGGTGTTTAA
TATTTGGTGTTACAATCTTCATGATTAATGCATTATCTGCTCGTAGTTATGCAGAAACAGAATTTTGGTTTTCAAGTATA
AAAGTATCTGCCATTATAGCTTTTATTATTCTTGGCGGCGCCGCTATGTTCGGTTTAATTGATTTAAAAGGCGACGAACC
AGCCCCATTATTATCAAATTTCGTAAATCATGGCGGTTTATTCCCAAATGGACTTGCAGCTATTCTATTAACGATGGTTA
CAGTTAATTATTCCTTCCAAGGTACAGAACTTGTCGGAATCGCAGCAGGTGAAAGTGAAGATCCAGCAAAAACTTTACCT
CGTTCTATTAGAAATATTATATGGCGTACGATGTTTTTCTTCGTCTTAGCAATCTTTGTTCTTGTTGCTTTAATTCCTTG
GGAAGAAGCAGGATTAACAAAAAGCCCGTTCGTTGCTGTTTTTGATAATATCAGTATTCCATATGCAGCTGATATTATGA
ACTTTGTTATTCTTACAGCTGTTCTTTCTGTCGCAAACTCAGGACTTTACGCGGCAACTCGTATGCTTTGGTCATTATCA
AAAAATGAAATGGCTCCAGCCTTTTTAAAGAAATTATCATCACGAGGAATACCTTTAAACACTTTAATTTTGACAATTTC
TATTTCTGCTTTTTCTCTTTTAACAAGCGTCGTAGCTGCTGAAACAGTTTACTTATGGTTAATTTCCATTTCTGGCGTCA
TTACAATTATTGTTTGGATGTCAATTTGTGTTTCTCAATTCTTTTTCCGTAAACATTATGTAGCAGACGGTGGAAGATTA
GAAGACTTAAAATTTAAAACGCCACTTTATCCACTTGTACCAATTCTTGGTTTTGGATTGTATGGCATTATATTAGTAAG
TCTTATCTTTATCCCAGATCAAAGACTAGGCATTTATTGTACTGTACCATTTATCATCTTTTGCTACACTTACTATCACT
TTAAAGTGAAGAAAAGAATTTCTACTAACACTTCTAGTGAAAATAAAATTAGCGAGACTATATAA

Upstream 100 bases:

>100_bases
TTATCTGAAAATTATAACAAGATTTCACATCACGGAATACATTCCATAATACGGAAAAACATCAAAATTTATTCTATCAA
CTACGAAAGTGAAGAAAACA

Downstream 100 bases:

>100_bases
TACTCTGCTTATATAAAAGACCGCACATGGCTTTTACTTCATGTGCGGTCTTTTATCCTTCTAATTCGCTTTAAAATTAT
ACAACGGCTTAATAATGTGT

Product: amino acid permease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MSQVNNTNNELKRTMKSRHLFMIALGGVIGTELFNGSGFIISQAGPGGSVLAFMAGGLLMYFVMLCLGELAVAMPVSGSF
QEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQRWFPDIPVWVWCLIFGVTIFMINALSARSYAETEFWFSSI
KVSAIIAFIILGGAAMFGLIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPAKTLP
RSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNISIPYAADIMNFVILTAVLSVANSGLYAATRMLWSLS
KNEMAPAFLKKLSSRGIPLNTLILTISISAFSLLTSVVAAETVYLWLISISGVITIIVWMSICVSQFFFRKHYVADGGRL
EDLKFKTPLYPLVPILGFGLYGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI

Sequences:

>Translated_474_residues
MSQVNNTNNELKRTMKSRHLFMIALGGVIGTELFNGSGFIISQAGPGGSVLAFMAGGLLMYFVMLCLGELAVAMPVSGSF
QEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQRWFPDIPVWVWCLIFGVTIFMINALSARSYAETEFWFSSI
KVSAIIAFIILGGAAMFGLIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPAKTLP
RSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNISIPYAADIMNFVILTAVLSVANSGLYAATRMLWSLS
KNEMAPAFLKKLSSRGIPLNTLILTISISAFSLLTSVVAAETVYLWLISISGVITIIVWMSICVSQFFFRKHYVADGGRL
EDLKFKTPLYPLVPILGFGLYGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI
>Mature_473_residues
SQVNNTNNELKRTMKSRHLFMIALGGVIGTELFNGSGFIISQAGPGGSVLAFMAGGLLMYFVMLCLGELAVAMPVSGSFQ
EYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQRWFPDIPVWVWCLIFGVTIFMINALSARSYAETEFWFSSIK
VSAIIAFIILGGAAMFGLIDLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPAKTLPR
SIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNISIPYAADIMNFVILTAVLSVANSGLYAATRMLWSLSK
NEMAPAFLKKLSSRGIPLNTLILTISISAFSLLTSVVAAETVYLWLISISGVITIIVWMSICVSQFFFRKHYVADGGRLE
DLKFKTPLYPLVPILGFGLYGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI

Specific function: Putative transport protein involved in arginine degradative pathway. Probably transports arginine or ornithine [H]

COG id: COG0833

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081708, Length=467, Percent_Identity=51.3918629550321, Blast_Score=491, Evalue=1e-140,
Organism=Escherichia coli, GI1788480, Length=416, Percent_Identity=45.9134615384615, Blast_Score=373, Evalue=1e-104,
Organism=Escherichia coli, GI1786789, Length=455, Percent_Identity=37.3626373626374, Blast_Score=305, Evalue=4e-84,
Organism=Escherichia coli, GI1789017, Length=455, Percent_Identity=38.2417582417582, Blast_Score=293, Evalue=2e-80,
Organism=Escherichia coli, GI1786302, Length=457, Percent_Identity=34.1356673960613, Blast_Score=282, Evalue=4e-77,
Organism=Escherichia coli, GI48994972, Length=443, Percent_Identity=35.4401805869075, Blast_Score=276, Evalue=2e-75,
Organism=Escherichia coli, GI1786602, Length=465, Percent_Identity=34.1935483870968, Blast_Score=255, Evalue=5e-69,
Organism=Escherichia coli, GI87081915, Length=473, Percent_Identity=32.76955602537, Blast_Score=247, Evalue=1e-66,
Organism=Escherichia coli, GI1790653, Length=461, Percent_Identity=32.7548806941432, Blast_Score=241, Evalue=9e-65,
Organism=Escherichia coli, GI87081869, Length=238, Percent_Identity=26.890756302521, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320772, Length=441, Percent_Identity=34.2403628117914, Blast_Score=259, Evalue=6e-70,
Organism=Saccharomyces cerevisiae, GI6324061, Length=427, Percent_Identity=32.0843091334895, Blast_Score=239, Evalue=5e-64,
Organism=Saccharomyces cerevisiae, GI6324059, Length=425, Percent_Identity=32.7058823529412, Blast_Score=224, Evalue=3e-59,
Organism=Saccharomyces cerevisiae, GI6324553, Length=406, Percent_Identity=34.9753694581281, Blast_Score=223, Evalue=4e-59,
Organism=Saccharomyces cerevisiae, GI6322892, Length=412, Percent_Identity=34.7087378640777, Blast_Score=214, Evalue=2e-56,
Organism=Saccharomyces cerevisiae, GI6320717, Length=424, Percent_Identity=29.9528301886792, Blast_Score=203, Evalue=4e-53,
Organism=Saccharomyces cerevisiae, GI6321629, Length=422, Percent_Identity=31.7535545023697, Blast_Score=202, Evalue=6e-53,
Organism=Saccharomyces cerevisiae, GI6319824, Length=422, Percent_Identity=29.8578199052133, Blast_Score=202, Evalue=8e-53,
Organism=Saccharomyces cerevisiae, GI6320251, Length=421, Percent_Identity=30.6413301662708, Blast_Score=195, Evalue=2e-50,
Organism=Saccharomyces cerevisiae, GI6319543, Length=418, Percent_Identity=27.9904306220096, Blast_Score=188, Evalue=2e-48,
Organism=Saccharomyces cerevisiae, GI6319542, Length=441, Percent_Identity=30.1587301587302, Blast_Score=188, Evalue=2e-48,
Organism=Saccharomyces cerevisiae, GI6324990, Length=415, Percent_Identity=29.6385542168675, Blast_Score=187, Evalue=3e-48,
Organism=Saccharomyces cerevisiae, GI6324924, Length=488, Percent_Identity=27.8688524590164, Blast_Score=187, Evalue=4e-48,
Organism=Saccharomyces cerevisiae, GI6321053, Length=419, Percent_Identity=27.6849642004773, Blast_Score=186, Evalue=9e-48,
Organism=Saccharomyces cerevisiae, GI6322967, Length=457, Percent_Identity=30.6345733041575, Blast_Score=184, Evalue=2e-47,
Organism=Saccharomyces cerevisiae, GI6324981, Length=505, Percent_Identity=30.2970297029703, Blast_Score=168, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6319608, Length=433, Percent_Identity=24.7113163972286, Blast_Score=156, Evalue=5e-39,
Organism=Saccharomyces cerevisiae, GI6320364, Length=94, Percent_Identity=38.2978723404255, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 52241; Mature: 52110

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS00218 AMINO_ACID_PERMEASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVNNTNNELKRTMKSRHLFMIALGGVIGTELFNGSGFIISQAGPGGSVLAFMAGGLLM
CCCCCCCHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHH
YFVMLCLGELAVAMPVSGSFQEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQ
HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECCEEHH
RWFPDIPVWVWCLIFGVTIFMINALSARSYAETEFWFSSIKVSAIIAFIILGGAAMFGLI
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
DLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPAKTLP
EECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
RSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNISIPYAADIMNFVILTA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
VLSVANSGLYAATRMLWSLSKNEMAPAFLKKLSSRGIPLNTLILTISISAFSLLTSVVAA
HHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHH
ETVYLWLISISGVITIIVWMSICVSQFFFRKHYVADGGRLEDLKFKTPLYPLVPILGFGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
YGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC
>Mature Secondary Structure 
SQVNNTNNELKRTMKSRHLFMIALGGVIGTELFNGSGFIISQAGPGGSVLAFMAGGLLM
CCCCCCHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHH
YFVMLCLGELAVAMPVSGSFQEYATKFINPATGFTIGWLYWLSWANTTGLEFTTAGITMQ
HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECCEEHH
RWFPDIPVWVWCLIFGVTIFMINALSARSYAETEFWFSSIKVSAIIAFIILGGAAMFGLI
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
DLKGDEPAPLLSNFVNHGGLFPNGLAAILLTMVTVNYSFQGTELVGIAAGESEDPAKTLP
EECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
RSIRNIIWRTMFFFVLAIFVLVALIPWEEAGLTKSPFVAVFDNISIPYAADIMNFVILTA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
VLSVANSGLYAATRMLWSLSKNEMAPAFLKKLSSRGIPLNTLILTISISAFSLLTSVVAA
HHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHH
ETVYLWLISISGVITIIVWMSICVSQFFFRKHYVADGGRLEDLKFKTPLYPLVPILGFGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
YGIILVSLIFIPDQRLGIYCTVPFIIFCYTYYHFKVKKRISTNTSSENKISETI
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]