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The map label for this gene is ydbM [H]

Identifier: 227814097

GI number: 227814097

Start: 1380887

End: 1382035

Strand: Direct

Name: ydbM [H]

Synonym: BAMEG_1504

Alternate gene names: 227814097

Gene position: 1380887-1382035 (Clockwise)

Preceding gene: 227814096

Following gene: 227814099

Centisome position: 26.4

GC content: 40.21

Gene sequence:

>1149_bases
ATGGCACTCTCATTTGTTGAAACAGAAAAACAATCTTTCATTATTGAACAAATAAATAAATTGATTCCGAAGTTCATGGA
AAGGGAGCATCAACTAAGTGAATTAGGATCATTTCCGTATGAAAATATAAATGATTTGAAAGATATCGGATATACGAAAT
TAACGTTGCCGAAGGAATTTGGTGGTAGTGCGATTTCTTTATATGACTTCGTTCTATTTCAAGAGAAAATTGCGGAAGGC
TGCGGGGCTACTGCATTATCGATTGGCTGGCATCTTGGCATTGTGAAAGAACTAGCGGAAAATCGCTCTTGGAATGATGA
GATGTTCAAATGGTTTTGCGAAGAAGTGCGTAGCGGTGCGCTCTTTAACCGAGCAGCAACAGAACCGAAAACAGGGAGTC
CGACGCGTGGTGGAAAACCAGAAACAATAGCGGTTCAACAAGGTGAGAAGTGGATTATAAATGGAAGAAAAACTTTTACA
ACGATGGCGCCAGTACTTGATTATTTTATTATTTCAGCGAGTATGGAAGGCCGTGAAGAAGTTGGTGAGTTTGTTATTCC
AAGAAATACACTCGGTGTATCCATTGAAGAAACGTGGGATAGCGTTGCGATGCGAGGGACTGCTAGCCACGACCTTGTCT
TACAAAATGTAGAGATAGAAAACCGCTTTTTTACGGATGTGAAAGGCGGGAAAGTGAAACAAAAGGGTATTGGCTGGTTG
CTACATATACCAGCATGTTATTTAGGAATTGCACAATCAGCAAGAAATTATGCAGTTCAATTTGCGGGATCATACAAGCC
GAATAGTTTAAACCATTCTATTAGTTTATTACCGAATGTTAGAAGATTAGTTGGAGAATTAGAACTCGAGCTTATGCAAG
CTCGCGTCTTTTTATATCAAATTGCGAAAAAATATGATGAGGCAGAAGATAAACTGTCACTGCAAGCAGAATTAGCGGCA
GTGAAATACGCCGTAACAAATGCGGCGATATCCATAGTGGATAAATCAATGCGCATCGTAGGAGCAAAAAGTTTATCAGA
AAAAAATCCGCTTCATCGTTATTATTTAAACGTTAGGGCAGGACTACACAATCCGCCGATGGATGATGCAACACTATCTA
TGTTGGCGGATGCGGCGTTTCGATCGTAG

Upstream 100 bases:

>100_bases
TGTATTTTTATCGGAATAGTGAAACAATGGAGAGGTAGCTTCATATAATCATAATGACAAAATGAACGGTTTAAGAATCG
AGCATAAAGGAGATTATAGT

Downstream 100 bases:

>100_bases
TTTTTTTAACTTGAACTTTATTATTTAAGTGAAATATAGTTATTTTGAAAGCACGTGTTTGATTAGTAATCGAACGCGTG
CTTTTTATGTGCAGGAACGT

Product: putative acyl-CoA dehydrogenase, short-chain specific

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEFGGSAISLYDFVLFQEKIAEG
CGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRSGALFNRAATEPKTGSPTRGGKPETIAVQQGEKWIINGRKTFT
TMAPVLDYFIISASMEGREEVGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIENRFFTDVKGGKVKQKGIGWL
LHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQIAKKYDEAEDKLSLQAELAA
VKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRAGLHNPPMDDATLSMLADAAFRS

Sequences:

>Translated_382_residues
MALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEFGGSAISLYDFVLFQEKIAEG
CGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRSGALFNRAATEPKTGSPTRGGKPETIAVQQGEKWIINGRKTFT
TMAPVLDYFIISASMEGREEVGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIENRFFTDVKGGKVKQKGIGWL
LHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQIAKKYDEAEDKLSLQAELAA
VKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRAGLHNPPMDDATLSMLADAAFRS
>Mature_381_residues
ALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEFGGSAISLYDFVLFQEKIAEGC
GATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRSGALFNRAATEPKTGSPTRGGKPETIAVQQGEKWIINGRKTFTT
MAPVLDYFIISASMEGREEVGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIENRFFTDVKGGKVKQKGIGWLL
HIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQIAKKYDEAEDKLSLQAELAAV
KYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRAGLHNPPMDDATLSMLADAAFRS

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=339, Percent_Identity=22.1238938053097, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI226958412, Length=351, Percent_Identity=22.5071225071225, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI226958414, Length=324, Percent_Identity=22.2222222222222, Blast_Score=79, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17538396, Length=319, Percent_Identity=24.7648902821317, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17508101, Length=358, Percent_Identity=20.391061452514, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17534899, Length=315, Percent_Identity=21.2698412698413, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21356377, Length=343, Percent_Identity=23.0320699708455, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24646207, Length=349, Percent_Identity=24.0687679083095, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI21355753, Length=319, Percent_Identity=22.884012539185, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24666513, Length=355, Percent_Identity=23.3802816901408, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42727; Mature: 42596

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEECCHHH
GGSAISLYDFVLFQEKIAEGCGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRSGA
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
LFNRAATEPKTGSPTRGGKPETIAVQQGEKWIINGRKTFTTMAPVLDYFIISASMEGREE
HHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHHHHHCCCCCHHH
VGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIENRFFTDVKGGKVKQKGIGWL
HCCEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCEEECCCCCEEECCCCCEE
LHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQ
EEHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKKYDEAEDKLSLQAELAAVKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
GLHNPPMDDATLSMLADAAFRS
CCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
ALSFVETEKQSFIIEQINKLIPKFMEREHQLSELGSFPYENINDLKDIGYTKLTLPKEF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEECCHHH
GGSAISLYDFVLFQEKIAEGCGATALSIGWHLGIVKELAENRSWNDEMFKWFCEEVRSGA
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
LFNRAATEPKTGSPTRGGKPETIAVQQGEKWIINGRKTFTTMAPVLDYFIISASMEGREE
HHHHCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCHHHHHHHHHHHHHHHHCCCCCHHH
VGEFVIPRNTLGVSIEETWDSVAMRGTASHDLVLQNVEIENRFFTDVKGGKVKQKGIGWL
HCCEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCEEECCCCCEEECCCCCEE
LHIPACYLGIAQSARNYAVQFAGSYKPNSLNHSISLLPNVRRLVGELELELMQARVFLYQ
EEHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKKYDEAEDKLSLQAELAAVKYAVTNAAISIVDKSMRIVGAKSLSEKNPLHRYYLNVRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
GLHNPPMDDATLSMLADAAFRS
CCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]