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The map label for this gene is ywbI [H]

Identifier: 227814034

GI number: 227814034

Start: 1319703

End: 1320581

Strand: Direct

Name: ywbI [H]

Synonym: BAMEG_1441

Alternate gene names: 227814034

Gene position: 1319703-1320581 (Clockwise)

Preceding gene: 227814033

Following gene: 227814039

Centisome position: 25.23

GC content: 32.42

Gene sequence:

>879_bases
ATGGAATTACGTCATTTAGAGTACTTTATTCAAGTTTGTAATAATAATAGTTTTACTAAAGCTGCGGAAGTTCTAGGTAT
TTCACAGCCGACTTTAAGTCAACAAATCCGTGTGTTAGAAGGTGAACTTGATACACCTTTGTTTCATCGAGTTGGAAGAG
GTATCAAAATGACAGAAGCGGGTAAGCTGCTATTTGATAAAGGAAAATTTATCATGCAACAATTTGATGACGTTTATAAT
GAAATTTTTGAATTAAAGGGTGTAAAAAGAGGTGTGATTACTATAGGCGGTCTATTAGAGGATCTCACTTATTTAACACC
TTATATTATGAAGTTTCAACAACATTATCCCAACATCGTTGTAAAAATTATAGAATCCGAAGTTGCTGTAAATCAAATCG
TTGATAAAAATATTGATATAGGCATCACGCGTAGTGCTCAAATTCCAGACACATTAACAAGCACCCTTTTGTATAGTGAA
GAGCTTGTCCTTGTCATTCCAAAAAATCATCCTTTGAATGAAACATCATTTGTTTCTTTTCGAGAATTAGTAGGACTGAG
TAGAATAATGGTTTCATGTAGTTGTCGTGAATCTATTAAAATATATTGTGAGAGGTTAGGGTTATCTTTATCTGAAGCAA
ATATAGAAACAAAATCTTCTATTTCTCTATTAAGCCTTGTATATAATGGACATGGGGTTGCCATAATACCTCTTTCGCTG
GTTGACTTTGTTAATAATGATACCTTGAGCATAGTTCGTATTATTGATCCGACACCAAGGCAAGATATTAATCTTATTCA
CTTTGATGATAAATTTTTAAGTTTTGCAGCACGTATCTTTATGCAGAAGTTAAATGAACCTGAAAAAGTATTAGTATAA

Upstream 100 bases:

>100_bases
ATTGCAATTAGTACAGTGGGGAATAAAGTTGTTATGTTAACATATACATATTGTCCTTTTCATTATAAATCTTTCATAAA
GCGGAGAGTGGGTATCAAGA

Downstream 100 bases:

>100_bases
TAGAAATAATAATGATTATAGTGTGAGAATTAAAAATGATACATAATTCTTAGGATAAGACCTAAATTACAGTCAAAGGG
CAAGTAGATGTATATGTGTG

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MELRHLEYFIQVCNNNSFTKAAEVLGISQPTLSQQIRVLEGELDTPLFHRVGRGIKMTEAGKLLFDKGKFIMQQFDDVYN
EIFELKGVKRGVITIGGLLEDLTYLTPYIMKFQQHYPNIVVKIIESEVAVNQIVDKNIDIGITRSAQIPDTLTSTLLYSE
ELVLVIPKNHPLNETSFVSFRELVGLSRIMVSCSCRESIKIYCERLGLSLSEANIETKSSISLLSLVYNGHGVAIIPLSL
VDFVNNDTLSIVRIIDPTPRQDINLIHFDDKFLSFAARIFMQKLNEPEKVLV

Sequences:

>Translated_292_residues
MELRHLEYFIQVCNNNSFTKAAEVLGISQPTLSQQIRVLEGELDTPLFHRVGRGIKMTEAGKLLFDKGKFIMQQFDDVYN
EIFELKGVKRGVITIGGLLEDLTYLTPYIMKFQQHYPNIVVKIIESEVAVNQIVDKNIDIGITRSAQIPDTLTSTLLYSE
ELVLVIPKNHPLNETSFVSFRELVGLSRIMVSCSCRESIKIYCERLGLSLSEANIETKSSISLLSLVYNGHGVAIIPLSL
VDFVNNDTLSIVRIIDPTPRQDINLIHFDDKFLSFAARIFMQKLNEPEKVLV
>Mature_292_residues
MELRHLEYFIQVCNNNSFTKAAEVLGISQPTLSQQIRVLEGELDTPLFHRVGRGIKMTEAGKLLFDKGKFIMQQFDDVYN
EIFELKGVKRGVITIGGLLEDLTYLTPYIMKFQQHYPNIVVKIIESEVAVNQIVDKNIDIGITRSAQIPDTLTSTLLYSE
ELVLVIPKNHPLNETSFVSFRELVGLSRIMVSCSCRESIKIYCERLGLSLSEANIETKSSISLLSLVYNGHGVAIIPLSL
VDFVNNDTLSIVRIIDPTPRQDINLIHFDDKFLSFAARIFMQKLNEPEKVLV

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=284, Percent_Identity=28.8732394366197, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI145693105, Length=283, Percent_Identity=27.5618374558304, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787879, Length=253, Percent_Identity=29.2490118577075, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1790399, Length=274, Percent_Identity=27.007299270073, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788297, Length=176, Percent_Identity=30.6818181818182, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788887, Length=253, Percent_Identity=28.8537549407115, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786401, Length=148, Percent_Identity=29.0540540540541, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1789204, Length=254, Percent_Identity=26.3779527559055, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI2367136, Length=247, Percent_Identity=27.1255060728745, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788481, Length=286, Percent_Identity=26.5734265734266, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789440, Length=164, Percent_Identity=27.4390243902439, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=25.5681818181818, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081904, Length=196, Percent_Identity=29.0816326530612, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787530, Length=259, Percent_Identity=25.0965250965251, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790208, Length=243, Percent_Identity=24.2798353909465, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789173, Length=238, Percent_Identity=27.3109243697479, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788748, Length=282, Percent_Identity=22.6950354609929, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789506, Length=254, Percent_Identity=25.1968503937008, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789639, Length=261, Percent_Identity=24.1379310344828, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787128, Length=155, Percent_Identity=25.8064516129032, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33051; Mature: 33051

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRHLEYFIQVCNNNSFTKAAEVLGISQPTLSQQIRVLEGELDTPLFHRVGRGIKMTEA
CCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCEEECC
GKLLFDKGKFIMQQFDDVYNEIFELKGVKRGVITIGGLLEDLTYLTPYIMKFQQHYPNIV
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VKIIESEVAVNQIVDKNIDIGITRSAQIPDTLTSTLLYSEELVLVIPKNHPLNETSFVSF
HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
RELVGLSRIMVSCSCRESIKIYCERLGLSLSEANIETKSSISLLSLVYNGHGVAIIPLSL
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHEECCCCEEEEHHHH
VDFVNNDTLSIVRIIDPTPRQDINLIHFDDKFLSFAARIFMQKLNEPEKVLV
HHHHCCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCHHCCC
>Mature Secondary Structure
MELRHLEYFIQVCNNNSFTKAAEVLGISQPTLSQQIRVLEGELDTPLFHRVGRGIKMTEA
CCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCEEECC
GKLLFDKGKFIMQQFDDVYNEIFELKGVKRGVITIGGLLEDLTYLTPYIMKFQQHYPNIV
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VKIIESEVAVNQIVDKNIDIGITRSAQIPDTLTSTLLYSEELVLVIPKNHPLNETSFVSF
HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
RELVGLSRIMVSCSCRESIKIYCERLGLSLSEANIETKSSISLLSLVYNGHGVAIIPLSL
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHEECCCCEEEEHHHH
VDFVNNDTLSIVRIIDPTPRQDINLIHFDDKFLSFAARIFMQKLNEPEKVLV
HHHHCCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]