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The map label for this gene is hipB [C]

Identifier: 227813967

GI number: 227813967

Start: 1253203

End: 1253400

Strand: Direct

Name: hipB [C]

Synonym: BAMEG_1373

Alternate gene names: 227813967

Gene position: 1253203-1253400 (Clockwise)

Preceding gene: 227813966

Following gene: 227813968

Centisome position: 23.96

GC content: 36.87

Gene sequence:

>198_bases
TTGCATAATAAAATTGTAGTTTGTCGAGCAGAAAAAGGTTGGACCCAAGAAGAACTGGCAACAAGAGTGGGAGTTAGTCG
TCAAACTATCGCTACTCTTGAAAAGAATAAATATAACCCTTCTCTAATTCTTGCCTTTAAAATCGCAAATGCATTTGAAA
AGCCGTTAACCGACGTATTTGATTATCTAGAGGAGTGA

Upstream 100 bases:

>100_bases
CTTTTTTTATGAGGATTTTTAATTTTGAAAATATATTGTAAGAAATAATTTACAATTTGTAAAAAATAATTTACAATTAT
CTAAAGAGGTGTTGCTATTG

Downstream 100 bases:

>100_bases
TACATATGTTGTTGTTAAAAATTTTGTTATTTGGTTTAATAGTAATAAGTAAGATGTATGTAATAAAATTTCAATCAAGT
GATGAAGCAAATGACGAAAG

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MHNKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVFDYLEE

Sequences:

>Translated_65_residues
MHNKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVFDYLEE
>Mature_65_residues
MHNKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVFDYLEE

Specific function: Binds To Operator Sites With The Consensus Sequence 5-'Tatccn(8)GGATA-3' And Repress The Hip Operon Promoter. [C]

COG id: COG1476

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 7470; Mature: 7470

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVF
CCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHH
DYLEE
HHHCC
>Mature Secondary Structure
MHNKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVF
CCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHH
DYLEE
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]