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The map label for this gene is ydeR [H]

Identifier: 227813914

GI number: 227813914

Start: 1197863

End: 1199032

Strand: Direct

Name: ydeR [H]

Synonym: BAMEG_1320

Alternate gene names: 227813914

Gene position: 1197863-1199032 (Clockwise)

Preceding gene: 227813912

Following gene: 227813915

Centisome position: 22.9

GC content: 37.69

Gene sequence:

>1170_bases
ATGTCTAATTTTAAAAATAAAGTAATTGATAAGGATATTTCATCAGGTTTAATCATTCTTTTAGCAACTGCATGTGGTAT
TATTGTGGCTAATCTTTATTATGCACAGCCTTTAATTGGGGTAATTAGTAATGAAATTGGGCTTTCTAATAGTAGCGCTG
GATTAATTGTAACGCTAACTCAAATTGGATATGTTGTTGGCTTACTATTTCTTGTGCCTTTGGGGGATATTGTTGAGAAT
AAAAAATTGATACTTATATTGTTATTTTTAAGTGCATTTGCACTCATTTCCATGGTTTTTGTAAAAAGCGCAACTTTGTT
GTTAATTGCTTCATTCTTTATCGGACTGGGTTCGGTCGCAGCGCAAGTACTCGTACCTCTTGTATCATATCTTTCATCTG
AGAATGCACGCGGTCGCGTAGTTGGCAATGTCATGAGTGGTCTGTTATTAGGTATTATGCTTGCGCGACCGATATCTAGT
CTAGTAGCCGATATGTGGGGATGGAATGCAATATTTGCTTTATCTGCTACTGTAATTATTGTCTTAGCGTTTGTATTATC
GAAAGTACTCCCTACTAGGAAACCACAGGTAAAAACAAATTATATAGCCTTACTTAATTCAATGTGGCAACTGCTACGAA
CTACTCCAATTTTACGCCGTCGCGCCATTTATCATGCTTGTGTATTTGGGGCTTTCAGCTTATTCTGGACCACTGTTCCA
TTATTATTATCTAGTCCTGCTTTTCATTTTTCTCAGACTGCCATAGCATTATATGCACTTGTCGGAATTACAGGTGCAAT
AGCCGCTCCAATAGGTGGTCGTCTAGCTGATCTTGGCTGGACACGATCCGCCACTGGGATAGCTCTCACTGTTGTTATTA
TTTCTTTATTACTACCACTTATTATTCAAAGTAGTTCGCCCATCGGAATAGCTGTTTTAGTAATTGCTGCAATTCTGTTA
GACATGGGAGTATCTGCAAACCTTGTGCTTAGCCAACGTTTAATTTTCTCGTTAAGTCCAGAAATTCGTAGTCGATTAAA
CGGACTATTTATGGCTATTTTCTTTTTAGGAGGTGCTGTTGGATCCTTTATTGGAGGATGGAATCTAACATTATGGATAG
GAATCGCTTTTCCGACCATAGCCTTGCTTTATTTTGCTAGAGAAAAATAG

Upstream 100 bases:

>100_bases
GTAGTTCAGACTTAATTTATTACAATAAAAAATGGCATCGCAGTAGTTCTTGCCAAGGCGATTTAGTAATTTTGAAATAA
AAGTATGGGAGGAAATAGTT

Downstream 100 bases:

>100_bases
TTTTATAATCAAATTTAAACAGCCCGGATTCGTTTGAATGCTTCTTCATTGGTATGTCCGAGTTTTATAGATTAATTGCG
GTTATTTTGAAGTTTTTACA

Product: putative transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MSNFKNKVIDKDISSGLIILLATACGIIVANLYYAQPLIGVISNEIGLSNSSAGLIVTLTQIGYVVGLLFLVPLGDIVEN
KKLILILLFLSAFALISMVFVKSATLLLIASFFIGLGSVAAQVLVPLVSYLSSENARGRVVGNVMSGLLLGIMLARPISS
LVADMWGWNAIFALSATVIIVLAFVLSKVLPTRKPQVKTNYIALLNSMWQLLRTTPILRRRAIYHACVFGAFSLFWTTVP
LLLSSPAFHFSQTAIALYALVGITGAIAAPIGGRLADLGWTRSATGIALTVVIISLLLPLIIQSSSPIGIAVLVIAAILL
DMGVSANLVLSQRLIFSLSPEIRSRLNGLFMAIFFLGGAVGSFIGGWNLTLWIGIAFPTIALLYFAREK

Sequences:

>Translated_389_residues
MSNFKNKVIDKDISSGLIILLATACGIIVANLYYAQPLIGVISNEIGLSNSSAGLIVTLTQIGYVVGLLFLVPLGDIVEN
KKLILILLFLSAFALISMVFVKSATLLLIASFFIGLGSVAAQVLVPLVSYLSSENARGRVVGNVMSGLLLGIMLARPISS
LVADMWGWNAIFALSATVIIVLAFVLSKVLPTRKPQVKTNYIALLNSMWQLLRTTPILRRRAIYHACVFGAFSLFWTTVP
LLLSSPAFHFSQTAIALYALVGITGAIAAPIGGRLADLGWTRSATGIALTVVIISLLLPLIIQSSSPIGIAVLVIAAILL
DMGVSANLVLSQRLIFSLSPEIRSRLNGLFMAIFFLGGAVGSFIGGWNLTLWIGIAFPTIALLYFAREK
>Mature_388_residues
SNFKNKVIDKDISSGLIILLATACGIIVANLYYAQPLIGVISNEIGLSNSSAGLIVTLTQIGYVVGLLFLVPLGDIVENK
KLILILLFLSAFALISMVFVKSATLLLIASFFIGLGSVAAQVLVPLVSYLSSENARGRVVGNVMSGLLLGIMLARPISSL
VADMWGWNAIFALSATVIIVLAFVLSKVLPTRKPQVKTNYIALLNSMWQLLRTTPILRRRAIYHACVFGAFSLFWTTVPL
LLSSPAFHFSQTAIALYALVGITGAIAAPIGGRLADLGWTRSATGIALTVVIISLLLPLIIQSSSPIGIAVLVIAAILLD
MGVSANLVLSQRLIFSLSPEIRSRLNGLFMAIFFLGGAVGSFIGGWNLTLWIGIAFPTIALLYFAREK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787880, Length=385, Percent_Identity=24.1558441558442, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41505; Mature: 41373

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNFKNKVIDKDISSGLIILLATACGIIVANLYYAQPLIGVISNEIGLSNSSAGLIVTLT
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHH
QIGYVVGLLFLVPLGDIVENKKLILILLFLSAFALISMVFVKSATLLLIASFFIGLGSVA
HHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQVLVPLVSYLSSENARGRVVGNVMSGLLLGIMLARPISSLVADMWGWNAIFALSATVII
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VLAFVLSKVLPTRKPQVKTNYIALLNSMWQLLRTTPILRRRAIYHACVFGAFSLFWTTVP
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLSSPAFHFSQTAIALYALVGITGAIAAPIGGRLADLGWTRSATGIALTVVIISLLLPL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH
IIQSSSPIGIAVLVIAAILLDMGVSANLVLSQRLIFSLSPEIRSRLNGLFMAIFFLGGAV
HHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GSFIGGWNLTLWIGIAFPTIALLYFAREK
HHHHCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNFKNKVIDKDISSGLIILLATACGIIVANLYYAQPLIGVISNEIGLSNSSAGLIVTLT
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHH
QIGYVVGLLFLVPLGDIVENKKLILILLFLSAFALISMVFVKSATLLLIASFFIGLGSVA
HHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQVLVPLVSYLSSENARGRVVGNVMSGLLLGIMLARPISSLVADMWGWNAIFALSATVII
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VLAFVLSKVLPTRKPQVKTNYIALLNSMWQLLRTTPILRRRAIYHACVFGAFSLFWTTVP
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLSSPAFHFSQTAIALYALVGITGAIAAPIGGRLADLGWTRSATGIALTVVIISLLLPL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHH
IIQSSSPIGIAVLVIAAILLDMGVSANLVLSQRLIFSLSPEIRSRLNGLFMAIFFLGGAV
HHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GSFIGGWNLTLWIGIAFPTIALLYFAREK
HHHHCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]