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The map label for this gene is yfnB [H]

Identifier: 227813829

GI number: 227813829

Start: 1118243

End: 1118953

Strand: Direct

Name: yfnB [H]

Synonym: BAMEG_1234

Alternate gene names: 227813829

Gene position: 1118243-1118953 (Clockwise)

Preceding gene: 227813827

Following gene: 227813830

Centisome position: 21.38

GC content: 35.3

Gene sequence:

>711_bases
ATGAAATATAAAGTTATATTATTCGACGTAGACGATACATTATTAGATTTCCCTGAAACGGAAAAACACGCATTACATAA
TGCGTTTGTACAGTTCGGTATGCCTACAGGGTATACTGATTATCTTGCAAGTTATAAAGAGATTAGTAATGGGTTATGGA
GAGATTTAGAAAATAAAATGATTACGCTAAGTGAATTAGCGGTAGATCGATTTAGACAATTGTTTGCACTGCATAATATA
GAAGTAGATGCGCAGCAATTTAGTGATGTATATCTTAAAAACTTAGGGAAAGAAGTACATCTTATAGAAGGTGCAGTGCA
ATTATGTGAGAAGCTACAAGATTGCAAGCTAGGTATCATTACGAATGGATATACGAAGGTGCAACAATCTAGAATTGGAA
ATTCGCCTTTACGTAATTTCTTTGAACATATTATTATTTCTGAAGAGGTTGGCCATCAAAAACCAGCACGTGAGATTTTT
GATTATGCGTTTGAAAAGTTTGGAATTACGGATAAATCAAGTGTACTAATGGTTGGAGATTCGCTCACTTCTGATATGAG
AGGCGGAGAAGATTACGGCATTGATACGTGTTGGTATAATCCGAGTTTGAAAGAGAATAAGGCAAGTGTTAAGCCGACTT
ATGAAGTGGAGAGTCTGCTGCAAATTTTAGAACTTGTAGAAGTGGCGGAAGAAAAGGTAGTATCATTTTAA

Upstream 100 bases:

>100_bases
TCTCTGGATAGTAGCTGTTCGTAAAAGAAAAAATTCGACTTAAGAGTTGATTAATGAGAAAATACAAGTTGTAAATAACG
TACTAGTTGAGGAGAGCATA

Downstream 100 bases:

>100_bases
TCGTGTCGATATTTGTTGATAAGTCGATATTCTTTGTCGAATCGTTGATATATCGAAAAAATCGTTGATATATTTTAAGT
TACGGTAGATATATTTGAAA

Product: hydrolase, haloacid dehalogenase-like family

Products: (R)-2-hydroxyacid; halide

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKYKVILFDVDDTLLDFPETEKHALHNAFVQFGMPTGYTDYLASYKEISNGLWRDLENKMITLSELAVDRFRQLFALHNI
EVDAQQFSDVYLKNLGKEVHLIEGAVQLCEKLQDCKLGIITNGYTKVQQSRIGNSPLRNFFEHIIISEEVGHQKPAREIF
DYAFEKFGITDKSSVLMVGDSLTSDMRGGEDYGIDTCWYNPSLKENKASVKPTYEVESLLQILELVEVAEEKVVSF

Sequences:

>Translated_236_residues
MKYKVILFDVDDTLLDFPETEKHALHNAFVQFGMPTGYTDYLASYKEISNGLWRDLENKMITLSELAVDRFRQLFALHNI
EVDAQQFSDVYLKNLGKEVHLIEGAVQLCEKLQDCKLGIITNGYTKVQQSRIGNSPLRNFFEHIIISEEVGHQKPAREIF
DYAFEKFGITDKSSVLMVGDSLTSDMRGGEDYGIDTCWYNPSLKENKASVKPTYEVESLLQILELVEVAEEKVVSF
>Mature_236_residues
MKYKVILFDVDDTLLDFPETEKHALHNAFVQFGMPTGYTDYLASYKEISNGLWRDLENKMITLSELAVDRFRQLFALHNI
EVDAQQFSDVYLKNLGKEVHLIEGAVQLCEKLQDCKLGIITNGYTKVQQSRIGNSPLRNFFEHIIISEEVGHQKPAREIF
DYAFEKFGITDKSSVLMVGDSLTSDMRGGEDYGIDTCWYNPSLKENKASVKPTYEVESLLQILELVEVAEEKVVSF

Specific function: Unknown

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. YjjG family [H]

Homologues:

Organism=Escherichia coli, GI1790833, Length=227, Percent_Identity=35.2422907488987, Blast_Score=144, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006439
- InterPro:   IPR011951 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: 3.8.1.2

Molecular weight: Translated: 26993; Mature: 26993

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKVILFDVDDTLLDFPETEKHALHNAFVQFGMPTGYTDYLASYKEISNGLWRDLENKM
CCEEEEEEECCHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHE
ITLSELAVDRFRQLFALHNIEVDAQQFSDVYLKNLGKEVHLIEGAVQLCEKLQDCKLGII
EHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEE
TNGYTKVQQSRIGNSPLRNFFEHIIISEEVGHQKPAREIFDYAFEKFGITDKSSVLMVGD
ECCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECC
SLTSDMRGGEDYGIDTCWYNPSLKENKASVKPTYEVESLLQILELVEVAEEKVVSF
CHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKYKVILFDVDDTLLDFPETEKHALHNAFVQFGMPTGYTDYLASYKEISNGLWRDLENKM
CCEEEEEEECCHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHE
ITLSELAVDRFRQLFALHNIEVDAQQFSDVYLKNLGKEVHLIEGAVQLCEKLQDCKLGII
EHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEE
TNGYTKVQQSRIGNSPLRNFFEHIIISEEVGHQKPAREIFDYAFEKFGITDKSSVLMVGD
ECCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEECC
SLTSDMRGGEDYGIDTCWYNPSLKENKASVKPTYEVESLLQILELVEVAEEKVVSF
CHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (S)-2-haloacid; H2O

Specific reaction: (S)-2-haloacid + H2O = (R)-2-hydroxyacid + halide

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]