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The map label for this gene is polC [H]

Identifier: 227813558

GI number: 227813558

Start: 861526

End: 862473

Strand: Direct

Name: polC [H]

Synonym: BAMEG_0962

Alternate gene names: 227813558

Gene position: 861526-862473 (Clockwise)

Preceding gene: 227813556

Following gene: 227813559

Centisome position: 16.47

GC content: 33.76

Gene sequence:

>948_bases
GTGGGGAATATATCCTTACCGTTAGATTATGTTGTAATTGACTTTGAAACAACAGGATTTAACCCTTATAATGATAAAAT
CATTCAAGTGGCGGCAGTGAAATATCGTAATCATGAACTAGTAGATCAATTTGTTTCCTATGTGAATCCGAAGCGTCCAA
TCCCGGACCGAATAATGAGTTTAACAGGTATTACAAATTATCGTGTTTCGGATGCACCGACGATTGAAGAAGTGTTACCT
TTATTTTTAGCATTTTTACATACAAATGTAATTGTCGCTCATAATGCATCTTTTGATATGCGCTTTTTGAAAAGTAATGT
GAATATGCTTGGTTTACCGGAACCGAAAAATAAAGTGATTGATACTGTATTTTTAGCGAAGAAATATATGAAGCACGCTC
CTAATCATAAACTTGAAACGTTAAAGCGAATGCTTGGAATTCGTTTGAGTTCTCATAATGCATTTGATGATTGTATTACG
TGTGCAGCAGTTTATCAAAAATGTGCCTCTATTGAAGAAGAGGCGAAAAGGAAATCGAATACAGAAGTACTTGATGAGAC
AGCAGTATATGAAGCGGTAAAAGAGATACTTGTACGAAATAAACGTGATATTGAATGGATTCGTTGCATGAATGTAGGAA
GCTATTTAGATATAAAAGCTTTTTATCCAGTTATGAGATTAAAGGTAAAAGGGCGAAAGAAATACGTATTAACAGACATA
TTAGAAGATGATGTGAAAGAAATATGTAGGAGTTTAGCCTGTGAACCGGCGTTAAAAAGTGAAGTTGGTAACACGAGAAT
TATGCTTAATTGCTTAGAGGACGTCCTGAAATTAGAAAGTTATATTTTAGAACAGTATGATTTCGTACTGCAAGCGCTGC
ATGATTATAAACAAAGTGAAATGAATGCAGATGAAAAGTTAAAAGAGTATTTAAATATTATGGTATGA

Upstream 100 bases:

>100_bases
GGTGGAAAGTAGCCATTTCTGCCTTTTCTTTTTCACGTAGTGATAGCAGCATGTTATGATAAAAGAAATATAAACGTTTA
GAGATAAAGGAGGGGTTCAA

Downstream 100 bases:

>100_bases
AAAACTCCGTGTACGTTTTATTGTACACGGAGTTTTTTTAGGAGTATTAAAACATAAAATTTTCTTGCAAATCTGATTAA
AGAGTTTTTCCTTTGCTCAT

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: PolIII [H]

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MGNISLPLDYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRIMSLTGITNYRVSDAPTIEEVLP
LFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCIT
CAAVYQKCASIEEEAKRKSNTEVLDETAVYEAVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYVLTDI
LEDDVKEICRSLACEPALKSEVGNTRIMLNCLEDVLKLESYILEQYDFVLQALHDYKQSEMNADEKLKEYLNIMV

Sequences:

>Translated_315_residues
MGNISLPLDYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRIMSLTGITNYRVSDAPTIEEVLP
LFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCIT
CAAVYQKCASIEEEAKRKSNTEVLDETAVYEAVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYVLTDI
LEDDVKEICRSLACEPALKSEVGNTRIMLNCLEDVLKLESYILEQYDFVLQALHDYKQSEMNADEKLKEYLNIMV
>Mature_314_residues
GNISLPLDYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRIMSLTGITNYRVSDAPTIEEVLPL
FLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITC
AAVYQKCASIEEEAKRKSNTEVLDETAVYEAVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYVLTDIL
EDDVKEICRSLACEPALKSEVGNTRIMLNCLEDVLKLESYILEQYDFVLQALHDYKQSEMNADEKLKEYLNIMV

Specific function: Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity [H]

COG id: COG2176

COG function: function code L; DNA polymerase III, alpha subunit (gram-positive type)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Escherichia coli, GI1786409, Length=173, Percent_Identity=29.4797687861272, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011708
- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365
- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR006308
- InterPro:   IPR012337 [H]

Pfam domain/function: PF07733 DNA_pol3_alpha; PF00929 Exonuc_X-T; PF02811 PHP; PF01336 tRNA_anti [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 36315; Mature: 36183

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNISLPLDYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRIMS
CCCCCCCEEEEEEEEEECCCCCCCCCEEEEHHHHHCCHHHHHHHHHHCCCCCCCHHHHHH
LTGITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVI
HHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHCCCCEECCCCCHHHHH
DTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSN
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
TEVLDETAVYEAVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYVLTDI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEHHHHHHHHHHEECCCCHHHHHHH
LEDDVKEICRSLACEPALKSEVGNTRIMLNCLEDVLKLESYILEQYDFVLQALHDYKQSE
HHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNADEKLKEYLNIMV
CCHHHHHHHHHHHCC
>Mature Secondary Structure 
GNISLPLDYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPKRPIPDRIMS
CCCCCCEEEEEEEEEECCCCCCCCCEEEEHHHHHCCHHHHHHHHHHCCCCCCCHHHHHH
LTGITNYRVSDAPTIEEVLPLFLAFLHTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVI
HHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHCCCCEECCCCCHHHHH
DTVFLAKKYMKHAPNHKLETLKRMLGIRLSSHNAFDDCITCAAVYQKCASIEEEAKRKSN
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
TEVLDETAVYEAVKEILVRNKRDIEWIRCMNVGSYLDIKAFYPVMRLKVKGRKKYVLTDI
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEHHHHHHHHHHEECCCCHHHHHHH
LEDDVKEICRSLACEPALKSEVGNTRIMLNCLEDVLKLESYILEQYDFVLQALHDYKQSE
HHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNADEKLKEYLNIMV
CCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129 [H]