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The map label for this gene is rbfA

Identifier: 227813281

GI number: 227813281

Start: 614052

End: 614408

Strand: Direct

Name: rbfA

Synonym: BAMEG_0683

Alternate gene names: 227813281

Gene position: 614052-614408 (Clockwise)

Preceding gene: 227813280

Following gene: 227813282

Centisome position: 11.74

GC content: 34.45

Gene sequence:

>357_bases
ATGAAATTACGTGCAAACCGTGTAGGCGAGCAAATGAAAAAAGAATTAGGCGACATCATCAGTCGTAAAATTAAAGATCC
ACGTGTCGGATTTGTTACTGTAACAGATGTACAAGTGAGTAGAGATTTACAAATTGCTACAGTGTATATTTCTGTTTTAG
GTGATGAAGAACAGAAAGAAAATACACTAAAAGGTTTAGCGAAGGCAAAAGGCTTCATTCGTTCAGAAATTGGCCAACGT
ATTCGTCTTCGTAAAACGCCTGAAATTTCCTTTGAATTTGATGAATCTATTGGATATGGTCATCGAATTGATACACTTTT
ACATGAAATTAATAAAGAAGGTAAACGTGAAGAATAA

Upstream 100 bases:

>100_bases
TGAAAAAGAAATGAATCGTGTACTTGAGTACATCGATTCATTTCCTGAAATAGAACGTACGATAACACAATTGGAATGGT
ATTGAATGAGGTGAAGAGTT

Downstream 100 bases:

>100_bases
TGGATAGACATTTGTCTATCCATTTTTTCAATGTAAAATAAGTTTTGAATAAGTATTATGAAAGAATTACGATGAGGTGA
GCATATATGGAAGGTGTAGT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MKLRANRVGEQMKKELGDIISRKIKDPRVGFVTVTDVQVSRDLQIATVYISVLGDEEQKENTLKGLAKAKGFIRSEIGQR
IRLRKTPEISFEFDESIGYGHRIDTLLHEINKEGKREE

Sequences:

>Translated_118_residues
MKLRANRVGEQMKKELGDIISRKIKDPRVGFVTVTDVQVSRDLQIATVYISVLGDEEQKENTLKGLAKAKGFIRSEIGQR
IRLRKTPEISFEFDESIGYGHRIDTLLHEINKEGKREE
>Mature_118_residues
MKLRANRVGEQMKKELGDIISRKIKDPRVGFVTVTDVQVSRDLQIATVYISVLGDEEQKENTLKGLAKAKGFIRSEIGQR
IRLRKTPEISFEFDESIGYGHRIDTLLHEINKEGKREE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=112, Percent_Identity=42.8571428571429, Blast_Score=92, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_BACAA (C3P5L3)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002868049.1
- ProteinModelPortal:   C3P5L3
- SMR:   C3P5L3
- EnsemblBacteria:   EBBACT00000126547
- GeneID:   7849903
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_3972
- GeneTree:   EBGT00050000000796
- ProtClustDB:   PRK00521
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13541; Mature: 13541

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRANRVGEQMKKELGDIISRKIKDPRVGFVTVTDVQVSRDLQIATVYISVLGDEEQKE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECEEECCCCEEEHHEEEHHCCCHHHH
NTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTLLHEINKEGKREE
HHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKLRANRVGEQMKKELGDIISRKIKDPRVGFVTVTDVQVSRDLQIATVYISVLGDEEQKE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECEEECCCCEEEHHEEEHHCCCHHHH
NTLKGLAKAKGFIRSEIGQRIRLRKTPEISFEFDESIGYGHRIDTLLHEINKEGKREE
HHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA