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The map label for this gene is yomM [H]

Identifier: 227813155

GI number: 227813155

Start: 486426

End: 487394

Strand: Direct

Name: yomM [H]

Synonym: BAMEG_0553

Alternate gene names: 227813155

Gene position: 486426-487394 (Clockwise)

Preceding gene: 227813154

Following gene: 227813156

Centisome position: 9.3

GC content: 33.13

Gene sequence:

>969_bases
GTGAAACGAATAGTAGACCAAGCAATTTATGAGAAGTATGTTAGCCAGGAAAATAAAAGCCTAGTCAAAGATTTTCTTAT
TGAAAAGAAAGCACAAGGAAAAGCGGCAAGCACTTTAAAACAATATGGTTGGGATTTGCGAATTATTTTGTTTCTAATAC
ATCAACACTTCGAAAATAAAAGTCTTATTGAACTAACACGTAAAGACATTCGAAACTTATCTATTATTTTTCAAGAGCTG
GGAATGTCTAATGCGCGTGTAAATGGATTGATGAGTGCATTAAGGTCCGCATTAGAATTTTGTGCGGATGATGACGACTA
TGAATATGAATTTAATGTAGGTTCACGGGTTCGTGGTTTACCTAAGAATCCAGTTAGAGAAATTACTTTTATAACAGAAG
AACAAATTGAGTGGTTAATCGATGAGCTAATAGTACAAGAAAAATATATGTTAGCAACTTATTTAGCACTTTCTTATTAC
AGTGCCGCTAGAAAAAATGAGGTTTATCAGGTTCAAAAAGAAGAGTTGACAGAACGATATTACACAAATATTGTTCGAGG
GAAACGTGGTAAGAAATTTAGATTATATTACAATCCCCGAGTGCAGAAATGTATTCGTTTATATATAAATCAACGAGGTA
AAGATACTATTCCAGATTTGTTTGTGCGTGTTTATAAGAATGGTGGTCGAAAACTTTTAAATAAAAGCGTATTTAATTAC
TGGTGCAAGATATTCGCTAAGATGCTGTACGAAAAAGAAGGTAAAGAATTTAAAATCAATCCGCACTGTTTCCGTCATAG
CAGATTAGATAATTTAAAAGTGCAAGGTGTACCACTAGAAAAATTAAAATCGCTTGCGAATCATTCGGATATATCAACAA
CACAATCTTATTTAAAGGATAGAAGTGAAGAAGATATTGCAGACATCTTTGGAATGGATCCAAGTTGTTTTGCAGCTAAA
AAGGAGTGA

Upstream 100 bases:

>100_bases
GTCTTTTTTATTTTGCACAAAATATGGCTTTGAGTAAATTCAATTCATAGATCAAGAGGAGTGAGTTCGCTTCTCTTTTT
ATTTTGAGGAGATGATTAGT

Downstream 100 bases:

>100_bases
AAAGATGGATCGTATTGATGTATTATTAAAAGCTTTTATTGCCACTTTCGGTGGCTTCTGTGGGTATTTCTTGGGAGGAT
GGGATGCAACATTGAAAATC

Product: prophage LambdaBa02, site-specific recombinase, phage integrase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKRIVDQAIYEKYVSQENKSLVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHQHFENKSLIELTRKDIRNLSIIFQEL
GMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKNPVREITFITEEQIEWLIDELIVQEKYMLATYLALSYY
SAARKNEVYQVQKEELTERYYTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSVFNY
WCKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIADIFGMDPSCFAAK
KE

Sequences:

>Translated_322_residues
MKRIVDQAIYEKYVSQENKSLVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHQHFENKSLIELTRKDIRNLSIIFQEL
GMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKNPVREITFITEEQIEWLIDELIVQEKYMLATYLALSYY
SAARKNEVYQVQKEELTERYYTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSVFNY
WCKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIADIFGMDPSCFAAK
KE
>Mature_322_residues
MKRIVDQAIYEKYVSQENKSLVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHQHFENKSLIELTRKDIRNLSIIFQEL
GMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGLPKNPVREITFITEEQIEWLIDELIVQEKYMLATYLALSYY
SAARKNEVYQVQKEELTERYYTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSVFNY
WCKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKDRSEEDIADIFGMDPSCFAAK
KE

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37961; Mature: 37961

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIVDQAIYEKYVSQENKSLVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHQHFENK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCC
SLIELTRKDIRNLSIIFQELGMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC
PKNPVREITFITEEQIEWLIDELIVQEKYMLATYLALSYYSAARKNEVYQVQKEELTERY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSVFNY
HHHHHHCCCCCEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
WCKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKD
HHHHHHHHHHHHCCCEEECCHHHHHHCCCCCCEECCCCHHHHHHHHCCCCHHHHHHHHHC
RSEEDIADIFGMDPSCFAAKKE
CCHHHHHHHHCCCCHHHCCCCC
>Mature Secondary Structure
MKRIVDQAIYEKYVSQENKSLVKDFLIEKKAQGKAASTLKQYGWDLRIILFLIHQHFENK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCC
SLIELTRKDIRNLSIIFQELGMSNARVNGLMSALRSALEFCADDDDYEYEFNVGSRVRGL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC
PKNPVREITFITEEQIEWLIDELIVQEKYMLATYLALSYYSAARKNEVYQVQKEELTERY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YTNIVRGKRGKKFRLYYNPRVQKCIRLYINQRGKDTIPDLFVRVYKNGGRKLLNKSVFNY
HHHHHHCCCCCEEEEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHH
WCKIFAKMLYEKEGKEFKINPHCFRHSRLDNLKVQGVPLEKLKSLANHSDISTTQSYLKD
HHHHHHHHHHHHCCCEEECCHHHHHHCCCCCCEECCCCHHHHHHHHCCCCHHHHHHHHHC
RSEEDIADIFGMDPSCFAAKKE
CCHHHHHHHHCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]