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The map label for this gene is xre [H]

Identifier: 227813106

GI number: 227813106

Start: 452286

End: 452627

Strand: Reverse

Name: xre [H]

Synonym: BAMEG_0504

Alternate gene names: 227813106

Gene position: 452627-452286 (Counterclockwise)

Preceding gene: 227813123

Following gene: 227813102

Centisome position: 8.65

GC content: 35.09

Gene sequence:

>342_bases
ATGACTTTTGGAGAAAAACTAAAACAACTGAGGGGCAAGCGTACACAAGGTGATGTAGCTAACCTGTTAAACATATCAAG
AGCAACATACTCACATTTAGAAAACAACCGAATTGAACCTAGTATGACTGTATTGAACTCTATTGCAGATTTGTTTTGTG
TTTCAACGGATTATTTATTAGGAAGATCATCAGATCCACGTTTAACTGAAGAGCAAGACAAAACTGCTGATGAAATGGCT
AGAAGATTTATGGAATTAGTAGCTGATCTTCCTAAAGAAGAGCAAGAAAACGCATGGAAACAAGCAGCAATGTACGTGAA
TTTTACTAAAAACCAAAAATAA

Upstream 100 bases:

>100_bases
CTTTTATAAATTTTTTATCATTTTTACGAAAAGGGGTTTAAAGTGATAAAAATTGTATCTATAATGTAATTAAGGATTTA
CTGAGAGGGGAAAATTTAAT

Downstream 100 bases:

>100_bases
TATTACATTACAAAAGAAGCTAACTACTCAGTTAGCTTCTTTTAATTTCTCTTCTGTATATGTATGAGAAGTGATCTCTT
TTAAAACCTCTTCTGAGTTA

Product: prophage LambdaBa04, DNA-binding protein

Products: NA

Alternate protein names: Putative pbsX repressor [H]

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MTFGEKLKQLRGKRTQGDVANLLNISRATYSHLENNRIEPSMTVLNSIADLFCVSTDYLLGRSSDPRLTEEQDKTADEMA
RRFMELVADLPKEEQENAWKQAAMYVNFTKNQK

Sequences:

>Translated_113_residues
MTFGEKLKQLRGKRTQGDVANLLNISRATYSHLENNRIEPSMTVLNSIADLFCVSTDYLLGRSSDPRLTEEQDKTADEMA
RRFMELVADLPKEEQENAWKQAAMYVNFTKNQK
>Mature_112_residues
TFGEKLKQLRGKRTQGDVANLLNISRATYSHLENNRIEPSMTVLNSIADLFCVSTDYLLGRSSDPRLTEEQDKTADEMAR
RFMELVADLPKEEQENAWKQAAMYVNFTKNQK

Specific function: Probable repressor. Necessary for the maintenance of the lysogenic state [H]

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 13003; Mature: 12872

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFGEKLKQLRGKRTQGDVANLLNISRATYSHLENNRIEPSMTVLNSIADLFCVSTDYLL
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
GRSSDPRLTEEQDKTADEMARRFMELVADLPKEEQENAWKQAAMYVNFTKNQK
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TFGEKLKQLRGKRTQGDVANLLNISRATYSHLENNRIEPSMTVLNSIADLFCVSTDYLL
CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
GRSSDPRLTEEQDKTADEMARRFMELVADLPKEEQENAWKQAAMYVNFTKNQK
CCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2125016; 8083174; 9384377 [H]