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The map label for this gene is dppE [H]

Identifier: 227812868

GI number: 227812868

Start: 195180

End: 196820

Strand: Reverse

Name: dppE [H]

Synonym: BAMEG_0228

Alternate gene names: 227812868

Gene position: 196820-195180 (Counterclockwise)

Preceding gene: 227812869

Following gene: 227812867

Centisome position: 3.76

GC content: 35.28

Gene sequence:

>1641_bases
ATGAAAAAGAAGTTTGTACCCGGTATTGCATCAGTTGTAGGAGTAAGTATTTTATTAACTGGTTGCGGTAGTTATAAAAA
CGAAGCAAGCGGAGCAAATGCAAAAGACGAGGCACCTAGTAAACAGGTTTTAAACTTATCTTCACCTACTGAAATACGAA
CAATGGATACAGCTCGTGCTACAGATACTGATTCTGGTCAAGTAATGAGAAACGTATTTGAAGGTTTGTATAATCTTGGT
GAAGGTAACAAACCTATTCCTGGTGTTGCAAAATCTCATGAAGTAAGTGGTGATAAAACGAAATACACATTCCACCTGCG
AGATTCAAAATGGTCAAACGGTACTCCTGTTACAGCGAAAGATTTTGTCTTCGCTTGGCAAAGAGCTGTCGATCCAGCAA
CAGCCTCTGAATATGCATTTCTATTCTTTGATATTAAAAACGCAACAAAAATTAATAACAAAGAACTTCCAGCCGACCAA
CTTGGTGTAAAAGCAGTTGATGACCATACGTTTGAGGTAGAATTAGAGCGTCCTGTTCCGTATTTTATTAGCTTAACAGC
GTTCCCAACATTTCTACCAATTAACGAGGAATTCTTTAAAGCACAAGGTGATAAGTACGCTTTAGAAGATAATACAATCT
TGTATAATGGAGCTTTTACACTAAGCGATTGGAAGCATGAACAAAGCTTTAAATTCAAGAAAAACCCTACCTATTGGGAT
AAAGATACTGTCAAACTAGAAGAAATCAATTTTAACGTTGTAAAAGAAAAATCAACAGAAGTAAACTTATTCGAATCAAA
ACAATTAGACCGTATAAAATTAACATCTGATTTCGTTGATAAATATAAAAAATATGCAAACTTTAAAGAACGCCCGAACG
TAGGCGTACAATTTTTACGTATGAATCAACAAAACAAAGTACTGCAAAACGTTTCTGCACGCCAAGCAATCGATCAAACA
ATTGATCGAAAATCCTTTGTAAATACGTTATTAAATGATGGCTCTACACCAACCTTTGGTCTCGTCCCAAAAAACTTTGC
AAAAGGGCCTGATGGAAAGGACTTCCGTACTATAAACGGAGATTTAACCAAAGTTGATACAAAATCTGCACAAGAGTTAT
GGAAAAAGGCAAAACAAGAGCTTGGTTCTGAAAAGATTACATTAGAATTATTAACAAGTGATGCTGACCTTGATAAGAAA
ACGGGTGAGTTCTTAAAAGGACAACTAGAAAAGAATTTAGATGGATTAACAGTAAATGTGAAACCACAACCACGTAAACA
ACAAGTTTCACTTTTATTAAAAGGTGACTATGAAATCGGTATTGATGGCTGGAGCCCTGACTTTGCTGATCCAATTACAT
TCCTTGAATTGTTTACAACGAATAATCCATACAACTTAGATCATTACTCTAATAAGGAATTCGATAAAACAATTGAAAAG
GTTAAAACGACTTTAGCTGGTGATGAAAAAGCTCGATGGGAAGCATTACTAGCATCCGAGAAAATATTATTTAAAGACTC
CGTTATCGCTCCTCTTTACCAGAAAGGCGAATCTTATTTAGAACGTTCTTATGTGAAAGGAATTGTCCAAGTAGACTTTG
CAGGTCAATTAAACTTCAAATGGGCACAAATTGAAAAATAA

Upstream 100 bases:

>100_bases
TGTACGTAAAAATCCCTCTTTCTCAATACGAAAAGAGGGATTTTTTATTTTTCATTTCCCTCATCATCATCCAAACTTAA
TTATTTAGGAGGAAAATCAA

Downstream 100 bases:

>100_bases
AAGACAACCTGAATTGAAGTTTTTCTATCTACACCAATTGTTTTATTGAAAAAATGTACTAAAAGCGGGTTTCTCAATAA
GAGAAAATCCGCTTTTTTAA

Product: putative oligopeptide ABC transporter, oligopeptide-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 546; Mature: 546

Protein sequence:

>546_residues
MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARATDTDSGQVMRNVFEGLYNLG
EGNKPIPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAKDFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQ
LGVKAVDDHTFEVELERPVPYFISLTAFPTFLPINEEFFKAQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD
KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKYANFKERPNVGVQFLRMNQQNKVLQNVSARQAIDQT
IDRKSFVNTLLNDGSTPTFGLVPKNFAKGPDGKDFRTINGDLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKK
TGEFLKGQLEKNLDGLTVNVKPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDKTIEK
VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFKWAQIEK

Sequences:

>Translated_546_residues
MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARATDTDSGQVMRNVFEGLYNLG
EGNKPIPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAKDFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQ
LGVKAVDDHTFEVELERPVPYFISLTAFPTFLPINEEFFKAQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD
KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKYANFKERPNVGVQFLRMNQQNKVLQNVSARQAIDQT
IDRKSFVNTLLNDGSTPTFGLVPKNFAKGPDGKDFRTINGDLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKK
TGEFLKGQLEKNLDGLTVNVKPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDKTIEK
VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFKWAQIEK
>Mature_546_residues
MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARATDTDSGQVMRNVFEGLYNLG
EGNKPIPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAKDFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQ
LGVKAVDDHTFEVELERPVPYFISLTAFPTFLPINEEFFKAQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD
KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKYANFKERPNVGVQFLRMNQQNKVLQNVSARQAIDQT
IDRKSFVNTLLNDGSTPTFGLVPKNFAKGPDGKDFRTINGDLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKK
TGEFLKGQLEKNLDGLTVNVKPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDKTIEK
VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFKWAQIEK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the binding of dipeptides with high affinity. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=528, Percent_Identity=30.3030303030303, Blast_Score=228, Evalue=1e-60,
Organism=Escherichia coli, GI87081878, Length=534, Percent_Identity=29.9625468164794, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1789397, Length=493, Percent_Identity=28.1947261663286, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI1787762, Length=512, Percent_Identity=24.8046875, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787052, Length=473, Percent_Identity=24.9471458773784, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1789966, Length=486, Percent_Identity=23.4567901234568, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 61654; Mature: 61654

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARA
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCEEEECCCCC
TDTDSGQVMRNVFEGLYNLGEGNKPIPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAK
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHH
DFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQLGVKAVDDHTFEVELERPVP
HHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHCCCEEECCCEEEEEECCCCC
YFISLTAFPTFLPINEEFFKAQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD
EEEEEECCCEECCCCHHHHHCCCCEEEECCCEEEEECEEEECCCCCCCCCEECCCCCCCC
KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKYANFKERPNVGVQFLR
CCCEEEEECCEEEEECCCCEEEEECCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCEEEEE
MNQQNKVLQNVSARQAIDQTIDRKSFVNTLLNDGSTPTFGLVPKNFAKGPDGKDFRTING
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCCEEEECC
DLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKKTGEFLKGQLEKNLDGLTVNV
CEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
KPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDKTIEK
CCCCCHHEEEEEEECCEEEECCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCHHHHHHHH
VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFK
HHHHHCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEE
WAQIEK
EEECCC
>Mature Secondary Structure
MKKKFVPGIASVVGVSILLTGCGSYKNEASGANAKDEAPSKQVLNLSSPTEIRTMDTARA
CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCEEEECCCCC
TDTDSGQVMRNVFEGLYNLGEGNKPIPGVAKSHEVSGDKTKYTFHLRDSKWSNGTPVTAK
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHH
DFVFAWQRAVDPATASEYAFLFFDIKNATKINNKELPADQLGVKAVDDHTFEVELERPVP
HHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHCCCEEECCCEEEEEECCCCC
YFISLTAFPTFLPINEEFFKAQGDKYALEDNTILYNGAFTLSDWKHEQSFKFKKNPTYWD
EEEEEECCCEECCCCHHHHHCCCCEEEECCCEEEEECEEEECCCCCCCCCEECCCCCCCC
KDTVKLEEINFNVVKEKSTEVNLFESKQLDRIKLTSDFVDKYKKYANFKERPNVGVQFLR
CCCEEEEECCEEEEECCCCEEEEECCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCEEEEE
MNQQNKVLQNVSARQAIDQTIDRKSFVNTLLNDGSTPTFGLVPKNFAKGPDGKDFRTING
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHCCCCCCCCEEEECC
DLTKVDTKSAQELWKKAKQELGSEKITLELLTSDADLDKKTGEFLKGQLEKNLDGLTVNV
CEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
KPQPRKQQVSLLLKGDYEIGIDGWSPDFADPITFLELFTTNNPYNLDHYSNKEFDKTIEK
CCCCCHHEEEEEEECCEEEECCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCHHHHHHHH
VKTTLAGDEKARWEALLASEKILFKDSVIAPLYQKGESYLERSYVKGIVQVDFAGQLNFK
HHHHHCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCEE
WAQIEK
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]