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The map label for this gene is viuB

Identifier: 227082334

GI number: 227082334

Start: 2297917

End: 2298732

Strand: Reverse

Name: viuB

Synonym: VCM66_2133

Alternate gene names: 227082334

Gene position: 2298732-2297917 (Counterclockwise)

Preceding gene: 227082335

Following gene: 227082333

Centisome position: 79.47

GC content: 45.83

Gene sequence:

>816_bases
ATGAGTAACGAAGTCGAGCGCGTTTATCCGAGATTACTGGATTTTGTGCGTAAAAAATATGTATCAAAAAACCTACTTCG
AGTGACACTGACTGGTGAGGATTTAATTGGATTCCCCGAAGATCAAAATGGGTCACACATTAAGGTTTTTTTCCCTAATC
AGGCGAGTGGCATACTCCAATTACCGATTCGTGAGGGTGATAAAGTCATTTGGCCAGAGCATAAACCGGTTCCGCGAGCG
TATACCGTTAGACAATACCGAGCACAGAGCAATGAGCTTGATATCGATTTTGTTGTGCATGGAGAAGGAACACCGGGTGG
TGGATGGGCGCTAAAAGCTCAAACTGGTTCACAACTCGGTTTGATAGGTCCCGGTGGGCCAGACCCTCTTATTGAGCCAG
CAGATTGGCATATTATGGCTGGCGATCTCTCTGCTGTGCCTGCGATCAGTGCCATTTTAGAAAAAATGCCTAGTCAGGCC
AAAGGTTATGTATTTCTTGAAGTGGATGATATCGAAGATAAGCATGATATCTCCCATCCAGAACAGATGGTGATTAAGTG
GTTAGTGCGCGATCCTAATCAGGCGCAACCCGTTTTGGCGATGGCGATTGAACAACTGCCAGTACCGCAAGGCGCAGAGT
CGCTTTCTGCTTTTGTGGCAGGAGAAAATGAGAGCGTTATTGCGTGTCGTAAAATTTTGCGCAATGAATATCGAATCGCA
AGAGATAAGATTTACGCCATTCCTTATTGGAAGCGCGGTAAAAACGAAGAGGCGTACCACGAAGAGCGCCATGTGGTGAT
GGATGAAGAGTTTTAA

Upstream 100 bases:

>100_bases
CCGAACCATTGTTTTTCAACTGGGGCAGAACGTTGGGAGGATTGAGTGAATGACACTCCCAGCAAGGTTGGCTAAGGCAT
AAGATAAATTAGGTGAAAGA

Downstream 100 bases:

>100_bases
CCTCTGACTCAGCACGGATTTCATTCACCTTGCCTGTTAATGTGGTAAGCCCCATCAGGGGCTTACCAACCCCTCTCTTT
TCCCTTCCTACAAAGCTTCT

Product: vibriobactin utilization protein ViuB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MSNEVERVYPRLLDFVRKKYVSKNLLRVTLTGEDLIGFPEDQNGSHIKVFFPNQASGILQLPIREGDKVIWPEHKPVPRA
YTVRQYRAQSNELDIDFVVHGEGTPGGGWALKAQTGSQLGLIGPGGPDPLIEPADWHIMAGDLSAVPAISAILEKMPSQA
KGYVFLEVDDIEDKHDISHPEQMVIKWLVRDPNQAQPVLAMAIEQLPVPQGAESLSAFVAGENESVIACRKILRNEYRIA
RDKIYAIPYWKRGKNEEAYHEERHVVMDEEF

Sequences:

>Translated_271_residues
MSNEVERVYPRLLDFVRKKYVSKNLLRVTLTGEDLIGFPEDQNGSHIKVFFPNQASGILQLPIREGDKVIWPEHKPVPRA
YTVRQYRAQSNELDIDFVVHGEGTPGGGWALKAQTGSQLGLIGPGGPDPLIEPADWHIMAGDLSAVPAISAILEKMPSQA
KGYVFLEVDDIEDKHDISHPEQMVIKWLVRDPNQAQPVLAMAIEQLPVPQGAESLSAFVAGENESVIACRKILRNEYRIA
RDKIYAIPYWKRGKNEEAYHEERHVVMDEEF
>Mature_270_residues
SNEVERVYPRLLDFVRKKYVSKNLLRVTLTGEDLIGFPEDQNGSHIKVFFPNQASGILQLPIREGDKVIWPEHKPVPRAY
TVRQYRAQSNELDIDFVVHGEGTPGGGWALKAQTGSQLGLIGPGGPDPLIEPADWHIMAGDLSAVPAISAILEKMPSQAK
GYVFLEVDDIEDKHDISHPEQMVIKWLVRDPNQAQPVLAMAIEQLPVPQGAESLSAFVAGENESVIACRKILRNEYRIAR
DKIYAIPYWKRGKNEEAYHEERHVVMDEEF

Specific function: Involved in intracellular removal of iron from iron- vibriobactin complex. Vibriobactin is an iron-chelating compound involved in the transport of iron from the bacterial environment into the cell cytoplasm

COG id: COG2375

COG function: function code P; Siderophore-interacting protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yqjH

Homologues:

Organism=Escherichia coli, GI1789450, Length=244, Percent_Identity=28.2786885245902, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VIUB_VIBC3 (A5F660)

Other databases:

- EMBL:   AF030977
- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F660
- SMR:   A5F660
- STRING:   A5F660
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A1802
- eggNOG:   COG2375
- HOGENOM:   HBG661815
- OMA:   HEAGVAS
- ProtClustDB:   CLSK874713
- BioCyc:   VCHO345073:VC0395_A1802-MONOMER
- GO:   GO:0005737
- InterPro:   IPR013113
- InterPro:   IPR017927
- InterPro:   IPR017938
- InterPro:   IPR007037

Pfam domain/function: PF08021 FAD_binding_9; PF04954 SIP; SSF63380 Riboflavin_synthase_like_b-brl

EC number: NA

Molecular weight: Translated: 30515; Mature: 30384

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS51384 FAD_FR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNEVERVYPRLLDFVRKKYVSKNLLRVTLTGEDLIGFPEDQNGSHIKVFFPNQASGILQ
CCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCEEE
LPIREGDKVIWPEHKPVPRAYTVRQYRAQSNELDIDFVVHGEGTPGGGWALKAQTGSQLG
EEECCCCEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEECCCCEEE
LIGPGGPDPLIEPADWHIMAGDLSAVPAISAILEKMPSQAKGYVFLEVDDIEDKHDISHP
EECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCH
EQMVIKWLVRDPNQAQPVLAMAIEQLPVPQGAESLSAFVAGENESVIACRKILRNEYRIA
HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHH
RDKIYAIPYWKRGKNEEAYHEERHVVMDEEF
HHEEEECCCCCCCCCCCHHHHCCCEEECCCC
>Mature Secondary Structure 
SNEVERVYPRLLDFVRKKYVSKNLLRVTLTGEDLIGFPEDQNGSHIKVFFPNQASGILQ
CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCEEE
LPIREGDKVIWPEHKPVPRAYTVRQYRAQSNELDIDFVVHGEGTPGGGWALKAQTGSQLG
EEECCCCEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEECCCCEEE
LIGPGGPDPLIEPADWHIMAGDLSAVPAISAILEKMPSQAKGYVFLEVDDIEDKHDISHP
EECCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCH
EQMVIKWLVRDPNQAQPVLAMAIEQLPVPQGAESLSAFVAGENESVIACRKILRNEYRIA
HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHH
RDKIYAIPYWKRGKNEEAYHEERHVVMDEEF
HHEEEECCCCCCCCCCCHHHHCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8083157