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The map label for this gene is ccmF [H]

Identifier: 227082179

GI number: 227082179

Start: 2145536

End: 2147491

Strand: Reverse

Name: ccmF [H]

Synonym: VCM66_1976

Alternate gene names: 227082179

Gene position: 2147491-2145536 (Counterclockwise)

Preceding gene: 227082180

Following gene: 227082178

Centisome position: 74.24

GC content: 49.85

Gene sequence:

>1956_bases
ATGATTGCTGAAATTGGCCACTTTGCACTGATTGTATCGCTCAGCTTAGCGATATTACTCAGTGTGCTGCCATTAGTTGG
GGCGTCACGCAACAACACACTATTGATGAACACGGCTCGCCCTTTGGCATGGGGTATGTTCTTTTTGCTGTCGATCTCGT
TTGCGGTTTTGCTGTGGGCATTCTATATCAATGATTTTACAGTGCAATATGTGGCAAGTAACTCCAATAGTGAGCTGCCT
TGGTACTATCGCCTCACTGCTGTATGGGGCGCGCATGAAGGTTCATTACTGCTTTGGGTGCTTATCCAAGCGGCTTGGAC
TGTGGCTGTCGCGAGTTTTAGCCGCGGTATGCCACAAGAATCGGTAGCGCGTGTGCTTGCGGTGATGGGGATGATTACTG
TTGGGTTCTTACTCTTCATCATTCTAACGTCTAACCCGTTTTTACGCACCTTGCCTTATTTTCCGATTGACGGCCGTGAT
TTAAATCCGCTGCTGCAAGACCCCGGGTTAATCATTCACCCGCCTATGTTGTACATGGGATATGTGGGATTCTCCGTGGC
CTTCTCGTTTGCGATTGCTTCTTTGATGACAGGCCGTCTCGACACGGCATGGGCACGTTGGTCACGACCTTGGACAACGG
CCGCTTGGCTCTTTTTGACGCTGGGTATCGTACTGGGTTCATGGTGGGCTTACTACGAACTTGGCTGGGGCGGTTGGTGG
TTCTGGGATCCAGTGGAAAACGCCTCTTTCATGCCTTGGCTTGCCGGAACAGCGCTGATGCACTCATTAGCGGTGACTGA
AAAACGCGGCACGTTCAAAGCGTGGACGGTACTGCTGGCGATTTCTGCATTCTCGTTGAGCCTATTGGGCACCTTCTTAG
TGCGCTCAGGCATCTTGGTTTCGGTGCATGCTTTCGCCTCCGATCCGGCGCGCGGTATGTTCATTCTCGGCTTCTTGATT
GCGGTGATTGGTGGTTCACTACTGCTATTTGCGATCAAAGGCGCTTCAGTACGAGTGCGTGGTAATTTTGAGCTGGTATC
TCGTGAAAACAGCTTGTTGGTAAACAACGTGCTGCTGATGACCGCACTCGCGGTGGTACTGATTGGTACCTTGTTGCCTT
TAGTGCACAAACAACTGGGTCTTGGTTCCGTCTCTATCGGTGCGCCTTTCTTTAACATGCTGTTTGCCTGGTTGATGATT
CCTTTTGCATTTTTTATGGGAATTGGTCCACTGATCCGCTGGAAGCGCGATCAAATCTCCACACTCTTTAAACCTATGCT
CATCACAGCGATGGCATCGTTAGTATTGGCAGCGTTGATGATGTGGCTGAATGCTCCGACGTTTAGCCCAATGGCTTATC
TTGGTTGGGTCATGGCGTGGTGGATCTTACTGTTACACGCTTATGAACTGCACACGCGAGCGACTCATCGTCACCGCTTC
ATAGTTGGGGTGAAGAAACTGCAACGTAGCCACTGGGCGATGATGCTTGGTCATGTTGGTTTAGCGGTGAGCATCATTGG
TATTGCTATGGTGCAAAACTACAGCATTGAACGTGATGTGCGTTTGGCTCCGGGAGATAACTTCCAACTCAATGAGTACA
ACTTTTACTTCCAAGGTGTGCGTGATAAAGATGGACCGAACTACGATGGCTACATTGCTGATTTTGAAATCACTAGCCAA
GGCCAATATGTCAATACATTGCATGCCGAGAAACGTTTCTATCGCACCGCAAAGTCAATGATGACCGAAGCGGCGATCGA
CCGTGGCATTACGCGTGACCTTTACATTGCGATGGGTGAGCGTTTGGATGATAACCGCTCTTGGGCTGTGCGTATTTATT
ACAAACCTTATGTGCGCTGGATTTGGGCAGGCGGCTTGCTGATGGCCATCGGTGGTGCCTTAGCCATCAGTGACAAGCGT
TACCGCTTTAGAAAAAACGCACATCAGGAGGCTTAA

Upstream 100 bases:

>100_bases
AGCATGATGAAAACTATATGCCACCAGAAATTGCAGAGGCGATGAAAAAGACCCACGCTCCACTGCAATACTCGCAAGAA
CAGAAACAAGGAAGCGACCA

Downstream 100 bases:

>100_bases
GTGAATAAGAAGATTTTATTTATCCCGCTAGTGGCATTTTTGCTGTTGGCTGGTGTGTTTGCTACCCAGTTAATGAAAAA
CTCCGCAGGGGATGACCCAA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 651; Mature: 651

Protein sequence:

>651_residues
MIAEIGHFALIVSLSLAILLSVLPLVGASRNNTLLMNTARPLAWGMFFLLSISFAVLLWAFYINDFTVQYVASNSNSELP
WYYRLTAVWGAHEGSLLLWVLIQAAWTVAVASFSRGMPQESVARVLAVMGMITVGFLLFIILTSNPFLRTLPYFPIDGRD
LNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWARWSRPWTTAAWLFLTLGIVLGSWWAYYELGWGGWW
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILVSVHAFASDPARGMFILGFLI
AVIGGSLLLFAIKGASVRVRGNFELVSRENSLLVNNVLLMTALAVVLIGTLLPLVHKQLGLGSVSIGAPFFNMLFAWLMI
PFAFFMGIGPLIRWKRDQISTLFKPMLITAMASLVLAALMMWLNAPTFSPMAYLGWVMAWWILLLHAYELHTRATHRHRF
IVGVKKLQRSHWAMMLGHVGLAVSIIGIAMVQNYSIERDVRLAPGDNFQLNEYNFYFQGVRDKDGPNYDGYIADFEITSQ
GQYVNTLHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPYVRWIWAGGLLMAIGGALAISDKR
YRFRKNAHQEA

Sequences:

>Translated_651_residues
MIAEIGHFALIVSLSLAILLSVLPLVGASRNNTLLMNTARPLAWGMFFLLSISFAVLLWAFYINDFTVQYVASNSNSELP
WYYRLTAVWGAHEGSLLLWVLIQAAWTVAVASFSRGMPQESVARVLAVMGMITVGFLLFIILTSNPFLRTLPYFPIDGRD
LNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWARWSRPWTTAAWLFLTLGIVLGSWWAYYELGWGGWW
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILVSVHAFASDPARGMFILGFLI
AVIGGSLLLFAIKGASVRVRGNFELVSRENSLLVNNVLLMTALAVVLIGTLLPLVHKQLGLGSVSIGAPFFNMLFAWLMI
PFAFFMGIGPLIRWKRDQISTLFKPMLITAMASLVLAALMMWLNAPTFSPMAYLGWVMAWWILLLHAYELHTRATHRHRF
IVGVKKLQRSHWAMMLGHVGLAVSIIGIAMVQNYSIERDVRLAPGDNFQLNEYNFYFQGVRDKDGPNYDGYIADFEITSQ
GQYVNTLHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPYVRWIWAGGLLMAIGGALAISDKR
YRFRKNAHQEA
>Mature_651_residues
MIAEIGHFALIVSLSLAILLSVLPLVGASRNNTLLMNTARPLAWGMFFLLSISFAVLLWAFYINDFTVQYVASNSNSELP
WYYRLTAVWGAHEGSLLLWVLIQAAWTVAVASFSRGMPQESVARVLAVMGMITVGFLLFIILTSNPFLRTLPYFPIDGRD
LNPLLQDPGLIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWARWSRPWTTAAWLFLTLGIVLGSWWAYYELGWGGWW
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILVSVHAFASDPARGMFILGFLI
AVIGGSLLLFAIKGASVRVRGNFELVSRENSLLVNNVLLMTALAVVLIGTLLPLVHKQLGLGSVSIGAPFFNMLFAWLMI
PFAFFMGIGPLIRWKRDQISTLFKPMLITAMASLVLAALMMWLNAPTFSPMAYLGWVMAWWILLLHAYELHTRATHRHRF
IVGVKKLQRSHWAMMLGHVGLAVSIIGIAMVQNYSIERDVRLAPGDNFQLNEYNFYFQGVRDKDGPNYDGYIADFEITSQ
GQYVNTLHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPYVRWIWAGGLLMAIGGALAISDKR
YRFRKNAHQEA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=651, Percent_Identity=62.6728110599078, Blast_Score=782, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=352, Percent_Identity=49.7159090909091, Blast_Score=287, Evalue=1e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 73160; Mature: 73160

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAEIGHFALIVSLSLAILLSVLPLVGASRNNTLLMNTARPLAWGMFFLLSISFAVLLWA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
FYINDFTVQYVASNSNSELPWYYRLTAVWGAHEGSLLLWVLIQAAWTVAVASFSRGMPQE
HHHHCEEEEEEECCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
SVARVLAVMGMITVGFLLFIILTSNPFLRTLPYFPIDGRDLNPLLQDPGLIIHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHCCCCEEECHHHHHH
YVGFSVAFSFAIASLMTGRLDTAWARWSRPWTTAAWLFLTLGIVLGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHEEECCCCEE
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILV
EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPARGMFILGFLIAVIGGSLLLFAIKGASVRVRGNFELVSRENSLLVNNVLLM
EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEECCEEEEECCCCHHHHHHHHH
TALAVVLIGTLLPLVHKQLGLGSVSIGAPFFNMLFAWLMIPFAFFMGIGPLIRWKRDQIS
HHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHH
TLFKPMLITAMASLVLAALMMWLNAPTFSPMAYLGWVMAWWILLLHAYELHTRATHRHRF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVGVKKLQRSHWAMMLGHVGLAVSIIGIAMVQNYSIERDVRLAPGDNFQLNEYNFYFQGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEECCEEEEEECC
RDKDGPNYDGYIADFEITSQGQYVNTLHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGE
CCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
RLDDNRSWAVRIYYKPYVRWIWAGGLLMAIGGALAISDKRYRFRKNAHQEA
CCCCCCCEEEEEEEEHHHHHHHHCCHHHHHCCHHEECCHHHHHHHCCCCCC
>Mature Secondary Structure
MIAEIGHFALIVSLSLAILLSVLPLVGASRNNTLLMNTARPLAWGMFFLLSISFAVLLWA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
FYINDFTVQYVASNSNSELPWYYRLTAVWGAHEGSLLLWVLIQAAWTVAVASFSRGMPQE
HHHHCEEEEEEECCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
SVARVLAVMGMITVGFLLFIILTSNPFLRTLPYFPIDGRDLNPLLQDPGLIIHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCHHHHCCCCEEECHHHHHH
YVGFSVAFSFAIASLMTGRLDTAWARWSRPWTTAAWLFLTLGIVLGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHEEECCCCEE
FWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGILV
EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPARGMFILGFLIAVIGGSLLLFAIKGASVRVRGNFELVSRENSLLVNNVLLM
EEEECCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEECCEEEEECCCCHHHHHHHHH
TALAVVLIGTLLPLVHKQLGLGSVSIGAPFFNMLFAWLMIPFAFFMGIGPLIRWKRDQIS
HHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHH
TLFKPMLITAMASLVLAALMMWLNAPTFSPMAYLGWVMAWWILLLHAYELHTRATHRHRF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVGVKKLQRSHWAMMLGHVGLAVSIIGIAMVQNYSIERDVRLAPGDNFQLNEYNFYFQGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEECCEEEEEECC
RDKDGPNYDGYIADFEITSQGQYVNTLHAEKRFYRTAKSMMTEAAIDRGITRDLYIAMGE
CCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
RLDDNRSWAVRIYYKPYVRWIWAGGLLMAIGGALAISDKRYRFRKNAHQEA
CCCCCCCEEEEEEEEHHHHHHHHCCHHHHHCCHHEECCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]