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The map label for this gene is 227082108

Identifier: 227082108

GI number: 227082108

Start: 2070085

End: 2070753

Strand: Direct

Name: 227082108

Synonym: VCM66_1905

Alternate gene names: NA

Gene position: 2070085-2070753 (Clockwise)

Preceding gene: 227082106

Following gene: 227082109

Centisome position: 71.57

GC content: 52.47

Gene sequence:

>669_bases
TTGTTCCGTTGGGTGCTGAAGAATGATAAGCTCAACCGCACTTTCCAGCGCGACAATGGACGGACACAAGCACGCTTTAC
GCGCTTTACCACACTCGGAACAATAACGGGACATGACGTGAATCTTTACCTGCTGTTATTGGCAATAAGCCTGTTGAGTT
TAAGTCTGCAGTGGCCACCACTGCATGAGCTGACTCTGTGGCACTTCAGCGCCATAGAACAAGGTCAATGGTGGCGCATC
CTAACAGGAAACTTCGCACACACCAACTTTGCCCACTGGGCGATGAACCTTGCCGCATTATGGATCATCAGCTTTGTGTT
TAAACCCACGGCTCGTCAGCTTCTGATCCCTCTGCTACTGATCAGCCTTGCGGTGGGAGTGATGATTCTCGCCTCCGACA
TGCAGTCTTATGTTGGGCTCTCCGGCACCTTGCATGGTCTGTTTGCTTACTACGCGCTGAATGAAGCACTGAATGGACGA
CGCAGCAGTTGGCTGTTAGTGCTTGGCGTTATCGGAAAAGTCGCATGGGAGCAGTGGTTTGGCGCATCCGCTAGCACCGC
AGAGCTGATTGGCGCACGAGTAGCGACGGAAGCCCATTTGGCCGGTTTAGTCGGCGGTTTGTTGCTTGCTGCTGGGCATT
GCTTCTTGCAGCGTAAACTATCGCAATAA

Upstream 100 bases:

>100_bases
GTTGGTTTAACTCGTCATGCTCACGAAAATCTTCGCCCACCAATAGCCGACAATTGGCCAATGACAAGCTGAGAATGCGC
GCGGTACCGAGTGGGCGCTT

Downstream 100 bases:

>100_bases
ACAGGATAAAAAAGGCCGAACGCTATGCGTTCAGCCTTTTTATTTTTCAGTACGTGTGTTTCATTAACAGCCTAATTAGC
AACCGTAATGTTTGGCAATG

Product: hypothetical protein

Products: NA

Alternate protein names: Integral Membrane Protein; Rhomboid Family Membrane Protein; Rhomboid-Like Protein; Peptidase; Rhomboid Family Integral Membrane Protein

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MFRWVLKNDKLNRTFQRDNGRTQARFTRFTTLGTITGHDVNLYLLLLAISLLSLSLQWPPLHELTLWHFSAIEQGQWWRI
LTGNFAHTNFAHWAMNLAALWIISFVFKPTARQLLIPLLLISLAVGVMILASDMQSYVGLSGTLHGLFAYYALNEALNGR
RSSWLLVLGVIGKVAWEQWFGASASTAELIGARVATEAHLAGLVGGLLLAAGHCFLQRKLSQ

Sequences:

>Translated_222_residues
MFRWVLKNDKLNRTFQRDNGRTQARFTRFTTLGTITGHDVNLYLLLLAISLLSLSLQWPPLHELTLWHFSAIEQGQWWRI
LTGNFAHTNFAHWAMNLAALWIISFVFKPTARQLLIPLLLISLAVGVMILASDMQSYVGLSGTLHGLFAYYALNEALNGR
RSSWLLVLGVIGKVAWEQWFGASASTAELIGARVATEAHLAGLVGGLLLAAGHCFLQRKLSQ
>Mature_222_residues
MFRWVLKNDKLNRTFQRDNGRTQARFTRFTTLGTITGHDVNLYLLLLAISLLSLSLQWPPLHELTLWHFSAIEQGQWWRI
LTGNFAHTNFAHWAMNLAALWIISFVFKPTARQLLIPLLLISLAVGVMILASDMQSYVGLSGTLHGLFAYYALNEALNGR
RSSWLLVLGVIGKVAWEQWFGASASTAELIGARVATEAHLAGLVGGLLLAAGHCFLQRKLSQ

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24813; Mature: 24813

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRWVLKNDKLNRTFQRDNGRTQARFTRFTTLGTITGHDVNLYLLLLAISLLSLSLQWPP
CCEEEECCCCCCHHHHCCCCCCHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
LHELTLWHFSAIEQGQWWRILTGNFAHTNFAHWAMNLAALWIISFVFKPTARQLLIPLLL
CHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
ISLAVGVMILASDMQSYVGLSGTLHGLFAYYALNEALNGRRSSWLLVLGVIGKVAWEQWF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
GASASTAELIGARVATEAHLAGLVGGLLLAAGHCFLQRKLSQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFRWVLKNDKLNRTFQRDNGRTQARFTRFTTLGTITGHDVNLYLLLLAISLLSLSLQWPP
CCEEEECCCCCCHHHHCCCCCCHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
LHELTLWHFSAIEQGQWWRILTGNFAHTNFAHWAMNLAALWIISFVFKPTARQLLIPLLL
CHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
ISLAVGVMILASDMQSYVGLSGTLHGLFAYYALNEALNGRRSSWLLVLGVIGKVAWEQWF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
GASASTAELIGARVATEAHLAGLVGGLLLAAGHCFLQRKLSQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA