| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
Click here to switch to the map view.
The map label for this gene is chiA-1 [H]
Identifier: 227082082
GI number: 227082082
Start: 2041198
End: 2043738
Strand: Reverse
Name: chiA-1 [H]
Synonym: VCM66_1876
Alternate gene names: 227082082
Gene position: 2043738-2041198 (Counterclockwise)
Preceding gene: 227082083
Following gene: 227082081
Centisome position: 70.66
GC content: 50.37
Gene sequence:
>2541_bases ATGAAGCGCTATTGTTTAGCCGCCGTGATTACCGCCAGTTTGGGGGTAAGTTACTCAGCACAAGCCTATAACTGTGCCGG AGTGCCAGTGTGGGACAGCAGTACAGTGTATGTTGGCAGTGATAAAGTTCAAAAAACCAACACCGCTTACCAAGCGCGTT ACTGGACTCAGGGTAACGATCCGGTAACCCATTCTGGTCAATGGGACGCATGGCAAATTCTTGGACAGTGTGACGGAGGG GCGAATAACCCACCTCAAGTGTCCATTCAATCACCACTCAATAACGCCAAGATCCCACAAGGCTCCGTCGTCGGATTACA AGCCAATGCCTCAGATAGTGATGGCAGCATTACTCAGGTGGAGTTTTTAGTCGGCACACAGCGTATCGCGATTGACCAAC AAGCCCCATACCAAGTGGATTGGACGGCAACGCTAGGAGCCACTTCAGTGACCGCGATTGCGACCGATAACCAAGGTGCA ACCACCAGCAGCACCGTAAATATCAGCGTAACGCCTACTGGTAACCCAGTTCCGCCAACTGTGACGTTGACTAGCCCAAC GGGCAGTGAACAGCTAACCGTGGGCGATGTTCTAGCCGTGGCCGCAAATGCCACTGACAGTGATGGCACTGTCAACGCTG TTGAATTTTATGTTGATGGCCAACTTGTTGTGATCGATAGCTCTGAGCCTTATCAGTTTAATTGGAATGCCGCTGTCGGC AGCCATACCTTTAAAGCCAAAGCGATTGATAACGACAACCTGTCTACCCTGAGCCAAGAAGTGACTTTAACGGTCGGCAG TGGCTCGAATGCAGGTTGCGCGGGTTTACCTGTGTATTCGGTGGGAACCGCGTATTCGGCAGGGCAGTTGGTACAAAATA AGAACCAAAAATATCGCTGTGATATCGCCGGTTGGTGTTCTTCCAGCTCCGGTTGGGCGTATGAGCCAGGGGTTGGAAGT TATTGGAAAGAAGCATGGAGTGGTTTAGGCGCTTGTTCAACGCCACCTGTCGTGACATTAACCAACCCAACGGCGAACCA AGTGATTCTTGCTGGCTCAACCGTCAGTGTGGCGGCGCAAGCCAGTGATGCCGATGGCTCGGTCATGCAAGTGGAGTTTT TTGCGGGCAACAACAGCTTAGGCGTGGTGACTCAAGCACCTTACGCGGTTAACTGGCTAGCCACTACTACGGGAAATCAA ACCCTGAAAGCAGTCGCAACCGACAACGACAGTAACACCAGTGAAAGCGCAGTCAGCGTGACGGTGAGCGATCAAGATCT GGTGGTTTCACTGACTTCACCGACATCCGGCCAAACCGTTGGTCTAGGTAAACCGGTCAATATTGCCGCCGATGCTACGT CACTAACCAATAATGTGGCGAAAGTGGAGTTTGTGGTCAACGGCGCGGTAGTTGCAACGGATACAACAGAGCCTTTTGCT TACAGTTGGACGCCAAGTGCGATTGGTAACTATACCGTTGCCGCGAAAGCGACTGACGCAGCAGGAACGAGCGTGACCTC TTCTGCTGCCGCAATCAGCGTGGTAGAGCAAGCGCAGAAGAAACATCGCTTGATTGGTTACTGGCATAACTTCGTCAATG GTGCGGGTTGCCCAATTCGTTTGGCGGATATGTCACAAGCGTGGGATGTGATTGATATTGCCTTTGCAGAAAACGATCGC AACAGTACCGGAACGGTACATTTCAACCTGTATGCCGGTGATATTTACAGCAGTTGTCCTGCGCTCGATCCTGCGCAATT CAAGCAAGATATGAAAGCACTGCAAGCGAAAGGTAAAGTATTTGTCCTTTCCTTAGGTGGCGCTGAAGGCACTATTACCC TTAACACTGATCAAGATGAAGCCAACTTCGTGAGCAGCCTGACTGCGTTGATCAAAGAATGGGGCTTTGATGGGTTGGAT GTGGATCTCGAAAGTGGTTCAAACCTTGTTCATGGCTCACAAATTCAAGCGCGCTTAGGCCGAGCATTGAAGCAAATCGA GAAAAACATCGGTGGTGATATGTTCCTCACTATGGCGCCTGAACACCCTTATGTGCAAGGTGGTATGGTTGCCTACAGTG GAATTTGGGGCGCTTACATTCCGGTGATTAACGAAGTGCGCGATACGCTTGATATTCTGCATGTTCAGCTCTACAACAAC GGTGGTTTACCTAACCCATACACACCGAGCGCGGCACCAGAAGGCTCTGTGGATATGATGGTCGCCCAATCAAAAATGTT GATTGAAGGCTTCACTTTAGCCAACGGGACACGCTTTGAACCATTGCGTGATGACCAAGTAGCCATTGGTTTGCCATCAG GTCCAAGTTCGGCAAATTCGGGTCAAGCTCCAACCCAAAATATCCTTGATGCGTTGGATTGTTTAACCAAAGGAACCCGC TGCGGCACCATCAAACCAGCCTTTGCCTACCCCAATTATGCAGGCGTGATGACCTGGTCAATCAACTGGGATAAGCACGA CGGCTTTAATTTTTCCAAACCGGTTGGGGATAAACTTAGCCAGATGAATAATGCTCAGTAA
Upstream 100 bases:
>100_bases CACTGTGCCGAGAACGGTAAACTATTCCATTGATTAACATGCAAATCTTTCACTCTGGAGTATTAGTTATAAGCGACATC ATCTAATACAGGAGAGAAAC
Downstream 100 bases:
>100_bases ATCCGTTCGTTGAGTTTCTTTTATCGCCAAATTCACCTCAGTTACGCTGGGGTGAATTTTTTATGGCACTTGTCTAGAGA GTTACCAATAAGTAAAGAGG
Product: chitinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MKRYCLAAVITASLGVSYSAQAYNCAGVPVWDSSTVYVGSDKVQKTNTAYQARYWTQGNDPVTHSGQWDAWQILGQCDGG ANNPPQVSIQSPLNNAKIPQGSVVGLQANASDSDGSITQVEFLVGTQRIAIDQQAPYQVDWTATLGATSVTAIATDNQGA TTSSTVNISVTPTGNPVPPTVTLTSPTGSEQLTVGDVLAVAANATDSDGTVNAVEFYVDGQLVVIDSSEPYQFNWNAAVG SHTFKAKAIDNDNLSTLSQEVTLTVGSGSNAGCAGLPVYSVGTAYSAGQLVQNKNQKYRCDIAGWCSSSSGWAYEPGVGS YWKEAWSGLGACSTPPVVTLTNPTANQVILAGSTVSVAAQASDADGSVMQVEFFAGNNSLGVVTQAPYAVNWLATTTGNQ TLKAVATDNDSNTSESAVSVTVSDQDLVVSLTSPTSGQTVGLGKPVNIAADATSLTNNVAKVEFVVNGAVVATDTTEPFA YSWTPSAIGNYTVAAKATDAAGTSVTSSAAAISVVEQAQKKHRLIGYWHNFVNGAGCPIRLADMSQAWDVIDIAFAENDR NSTGTVHFNLYAGDIYSSCPALDPAQFKQDMKALQAKGKVFVLSLGGAEGTITLNTDQDEANFVSSLTALIKEWGFDGLD VDLESGSNLVHGSQIQARLGRALKQIEKNIGGDMFLTMAPEHPYVQGGMVAYSGIWGAYIPVINEVRDTLDILHVQLYNN GGLPNPYTPSAAPEGSVDMMVAQSKMLIEGFTLANGTRFEPLRDDQVAIGLPSGPSSANSGQAPTQNILDALDCLTKGTR CGTIKPAFAYPNYAGVMTWSINWDKHDGFNFSKPVGDKLSQMNNAQ
Sequences:
>Translated_846_residues MKRYCLAAVITASLGVSYSAQAYNCAGVPVWDSSTVYVGSDKVQKTNTAYQARYWTQGNDPVTHSGQWDAWQILGQCDGG ANNPPQVSIQSPLNNAKIPQGSVVGLQANASDSDGSITQVEFLVGTQRIAIDQQAPYQVDWTATLGATSVTAIATDNQGA TTSSTVNISVTPTGNPVPPTVTLTSPTGSEQLTVGDVLAVAANATDSDGTVNAVEFYVDGQLVVIDSSEPYQFNWNAAVG SHTFKAKAIDNDNLSTLSQEVTLTVGSGSNAGCAGLPVYSVGTAYSAGQLVQNKNQKYRCDIAGWCSSSSGWAYEPGVGS YWKEAWSGLGACSTPPVVTLTNPTANQVILAGSTVSVAAQASDADGSVMQVEFFAGNNSLGVVTQAPYAVNWLATTTGNQ TLKAVATDNDSNTSESAVSVTVSDQDLVVSLTSPTSGQTVGLGKPVNIAADATSLTNNVAKVEFVVNGAVVATDTTEPFA YSWTPSAIGNYTVAAKATDAAGTSVTSSAAAISVVEQAQKKHRLIGYWHNFVNGAGCPIRLADMSQAWDVIDIAFAENDR NSTGTVHFNLYAGDIYSSCPALDPAQFKQDMKALQAKGKVFVLSLGGAEGTITLNTDQDEANFVSSLTALIKEWGFDGLD VDLESGSNLVHGSQIQARLGRALKQIEKNIGGDMFLTMAPEHPYVQGGMVAYSGIWGAYIPVINEVRDTLDILHVQLYNN GGLPNPYTPSAAPEGSVDMMVAQSKMLIEGFTLANGTRFEPLRDDQVAIGLPSGPSSANSGQAPTQNILDALDCLTKGTR CGTIKPAFAYPNYAGVMTWSINWDKHDGFNFSKPVGDKLSQMNNAQ >Mature_846_residues MKRYCLAAVITASLGVSYSAQAYNCAGVPVWDSSTVYVGSDKVQKTNTAYQARYWTQGNDPVTHSGQWDAWQILGQCDGG ANNPPQVSIQSPLNNAKIPQGSVVGLQANASDSDGSITQVEFLVGTQRIAIDQQAPYQVDWTATLGATSVTAIATDNQGA TTSSTVNISVTPTGNPVPPTVTLTSPTGSEQLTVGDVLAVAANATDSDGTVNAVEFYVDGQLVVIDSSEPYQFNWNAAVG SHTFKAKAIDNDNLSTLSQEVTLTVGSGSNAGCAGLPVYSVGTAYSAGQLVQNKNQKYRCDIAGWCSSSSGWAYEPGVGS YWKEAWSGLGACSTPPVVTLTNPTANQVILAGSTVSVAAQASDADGSVMQVEFFAGNNSLGVVTQAPYAVNWLATTTGNQ TLKAVATDNDSNTSESAVSVTVSDQDLVVSLTSPTSGQTVGLGKPVNIAADATSLTNNVAKVEFVVNGAVVATDTTEPFA YSWTPSAIGNYTVAAKATDAAGTSVTSSAAAISVVEQAQKKHRLIGYWHNFVNGAGCPIRLADMSQAWDVIDIAFAENDR NSTGTVHFNLYAGDIYSSCPALDPAQFKQDMKALQAKGKVFVLSLGGAEGTITLNTDQDEANFVSSLTALIKEWGFDGLD VDLESGSNLVHGSQIQARLGRALKQIEKNIGGDMFLTMAPEHPYVQGGMVAYSGIWGAYIPVINEVRDTLDILHVQLYNN GGLPNPYTPSAAPEGSVDMMVAQSKMLIEGFTLANGTRFEPLRDDQVAIGLPSGPSSANSGQAPTQNILDALDCLTKGTR CGTIKPAFAYPNYAGVMTWSINWDKHDGFNFSKPVGDKLSQMNNAQ
Specific function: Unknown
COG id: COG3979
COG function: function code R; Uncharacterized protein contain chitin-binding domain type 3
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fibronectin type-III domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003610 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR001223 - InterPro: IPR001579 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR015520 [H]
Pfam domain/function: PF02839 CBM_5_12; PF00041 fn3; PF00704 Glyco_hydro_18 [H]
EC number: =3.2.1.14 [H]
Molecular weight: Translated: 88695; Mature: 88695
Theoretical pI: Translated: 4.31; Mature: 4.31
Prosite motif: PS01095 CHITINASE_18
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRYCLAAVITASLGVSYSAQAYNCAGVPVWDSSTVYVGSDKVQKTNTAYQARYWTQGND CCCHHHHHHHHHHCCCCCCCCEEECCCCEEECCCEEEECCCCCCCCCCEEEEEEEECCCC PVTHSGQWDAWQILGQCDGGANNPPQVSIQSPLNNAKIPQGSVVGLQANASDSDGSITQV CCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEE EFLVGTQRIAIDQQAPYQVDWTATLGATSVTAIATDNQGATTSSTVNISVTPTGNPVPPT EEEECCEEEEECCCCCEEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCE VTLTSPTGSEQLTVGDVLAVAANATDSDGTVNAVEFYVDGQLVVIDSSEPYQFNWNAAVG EEEECCCCCCEEECCEEEEEEECCCCCCCCEEEEEEEECCEEEEEECCCCEEEEECEEEC SHTFKAKAIDNDNLSTLSQEVTLTVGSGSNAGCAGLPVYSVGTAYSAGQLVQNKNQKYRC CCEEEEEEECCCCHHCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCHHHHCCCCEEEE DIAGWCSSSSGWAYEPGVGSYWKEAWSGLGACSTPPVVTLTNPTANQVILAGSTVSVAAQ EEEEECCCCCCEEECCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCEEEEECCEEEEEEE ASDADGSVMQVEFFAGNNSLGVVTQAPYAVNWLATTTGNQTLKAVATDNDSNTSESAVSV CCCCCCCEEEEEEEECCCCEEEEEECCEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEE TVSDQDLVVSLTSPTSGQTVGLGKPVNIAADATSLTNNVAKVEFVVNGAVVATDTTEPFA EECCCEEEEEEECCCCCCEEECCCCCEEEECCHHHCCCEEEEEEEEECEEEEECCCCCEE YSWTPSAIGNYTVAAKATDAAGTSVTSSAAAISVVEQAQKKHRLIGYWHNFVNGAGCPIR EECCCHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEHHHHCCCCCCCEE LADMSQAWDVIDIAFAENDRNSTGTVHFNLYAGDIYSSCPALDPAQFKQDMKALQAKGKV ECCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCHHHCCCCCCHHHHHHHHHHHHCCCCE FVLSLGGAEGTITLNTDQDEANFVSSLTALIKEWGFDGLDVDLESGSNLVHGSQIQARLG EEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECHHHHHHHH RALKQIEKNIGGDMFLTMAPEHPYVQGGMVAYSGIWGAYIPVINEVRDTLDILHVQLYNN HHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHEEEEEEEEECC GGLPNPYTPSAAPEGSVDMMVAQSKMLIEGFTLANGTRFEPLRDDQVAIGLPSGPSSANS CCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCC GQAPTQNILDALDCLTKGTRCGTIKPAFAYPNYAGVMTWSINWDKHDGFNFSKPVGDKLS CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHH QMNNAQ HHCCCC >Mature Secondary Structure MKRYCLAAVITASLGVSYSAQAYNCAGVPVWDSSTVYVGSDKVQKTNTAYQARYWTQGND CCCHHHHHHHHHHCCCCCCCCEEECCCCEEECCCEEEECCCCCCCCCCEEEEEEEECCCC PVTHSGQWDAWQILGQCDGGANNPPQVSIQSPLNNAKIPQGSVVGLQANASDSDGSITQV CCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEE EFLVGTQRIAIDQQAPYQVDWTATLGATSVTAIATDNQGATTSSTVNISVTPTGNPVPPT EEEECCEEEEECCCCCEEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCE VTLTSPTGSEQLTVGDVLAVAANATDSDGTVNAVEFYVDGQLVVIDSSEPYQFNWNAAVG EEEECCCCCCEEECCEEEEEEECCCCCCCCEEEEEEEECCEEEEEECCCCEEEEECEEEC SHTFKAKAIDNDNLSTLSQEVTLTVGSGSNAGCAGLPVYSVGTAYSAGQLVQNKNQKYRC CCEEEEEEECCCCHHCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCHHHHCCCCEEEE DIAGWCSSSSGWAYEPGVGSYWKEAWSGLGACSTPPVVTLTNPTANQVILAGSTVSVAAQ EEEEECCCCCCEEECCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCEEEEECCEEEEEEE ASDADGSVMQVEFFAGNNSLGVVTQAPYAVNWLATTTGNQTLKAVATDNDSNTSESAVSV CCCCCCCEEEEEEEECCCCEEEEEECCEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEE TVSDQDLVVSLTSPTSGQTVGLGKPVNIAADATSLTNNVAKVEFVVNGAVVATDTTEPFA EECCCEEEEEEECCCCCCEEECCCCCEEEECCHHHCCCEEEEEEEEECEEEEECCCCCEE YSWTPSAIGNYTVAAKATDAAGTSVTSSAAAISVVEQAQKKHRLIGYWHNFVNGAGCPIR EECCCHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEHHHHCCCCCCCEE LADMSQAWDVIDIAFAENDRNSTGTVHFNLYAGDIYSSCPALDPAQFKQDMKALQAKGKV ECCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCHHHCCCCCCHHHHHHHHHHHHCCCCE FVLSLGGAEGTITLNTDQDEANFVSSLTALIKEWGFDGLDVDLESGSNLVHGSQIQARLG EEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECHHHHHHHH RALKQIEKNIGGDMFLTMAPEHPYVQGGMVAYSGIWGAYIPVINEVRDTLDILHVQLYNN HHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHEEEEEEEEECC GGLPNPYTPSAAPEGSVDMMVAQSKMLIEGFTLANGTRFEPLRDDQVAIGLPSGPSSANS CCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCC GQAPTQNILDALDCLTKGTRCGTIKPAFAYPNYAGVMTWSINWDKHDGFNFSKPVGDKLS CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHH QMNNAQ HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1729234 [H]