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The map label for this gene is ynbB [H]

Identifier: 227082066

GI number: 227082066

Start: 2024606

End: 2025538

Strand: Direct

Name: ynbB [H]

Synonym: VCM66_1860

Alternate gene names: 227082066

Gene position: 2024606-2025538 (Clockwise)

Preceding gene: 227082065

Following gene: 227082067

Centisome position: 69.99

GC content: 45.23

Gene sequence:

>933_bases
ATGCTCAACATTCCTCAACACTCACTGCACTTGATGTTGGTGATTTTGACCATTTTAGTGGTAGGTACACTCTGTTATTT
GTGGCTGTCTCGCCGCTATCCTGAACGCGATTATCTCGAATTAAAGCTGCGTATTCGTTCATGGTGGTGGATGGTTGCGA
TTGTGTTTGTCGTATTGCAGCTTCCACTCAACTACACGCTCTTTTTTGTAGGTTTCCTCAGTTTCATGGCACTGAAAGAG
TTTCTCTCGATTGTGCCCACACGAATGACCGATCGCCGAGTGATTTTCTGGGCTTATTTGTCCATTCCATTTCAGTACTA
CTGGCTCTCCATCGGCTGGTACGGCATGTTCATTATCTTTATTCCAGTCTATGTATTCCTATACCTGCCTATGGTGATGG
TGCTGATTGGAGATACTAAAGGTTTTATTCGCTCGGCAGGCATTATTCACTGGGCAATGATGTTGACCGTATTTTGTATC
AGCCATATGGCCTACCTATTGGTGTTACCAAGCTTAAACCCAGATGCAGGTTCACTGGGTATGTTGCTGTTTTTATTGGT
AATGACTCAGTTCAATGATGTTGCACAATACGTGTGGGGAAAAAGTTTTGGTAAACATAAGATCGTTCCGAAAGTCAGCC
CGAATAAAACTTGGCAAGGCTTTATCGGCGGCACATTGACCGTGGTTACCGTTTCATACTTTGCAGCGCCTTATTTAACG
CCACTGACCGCAGCGCAAGGGTTGGTCGGCGGAGTCATCATTGCCTTGAGTGGATTTATTGGCGATTTGGTGATTTCTTC
AGTCAAGCGCGATTTGCGTATCAAAGACACCAGCCAGTTTATTCCGGGCCACGGGGGCATTCTGGACAGGGTCGATAGCT
TGATGTTTACTGCTCCGCTGTTTTTCCACTACCTCTATTATCTCTATTACTGA

Upstream 100 bases:

>100_bases
TGCTGATTGGGCTGGTACTCACGGTTTGGCGACGCTTACAGCACATTTATCAATTCCATGCGGCGCGTGCATCCTCGTCC
GATCATCAAGGTAACTAGTC

Downstream 100 bases:

>100_bases
GGATCATATGGCGCGTATTCTGAAAGTGCTGTTTTTCCTATTGATCGTTAAACCCTTAGTTTTTATTGGGTTAGGACTCA
ATATTTTGCAGCGCCAAAAT

Product: putative phosphatidate cytidylyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MLNIPQHSLHLMLVILTILVVGTLCYLWLSRRYPERDYLELKLRIRSWWWMVAIVFVVLQLPLNYTLFFVGFLSFMALKE
FLSIVPTRMTDRRVIFWAYLSIPFQYYWLSIGWYGMFIIFIPVYVFLYLPMVMVLIGDTKGFIRSAGIIHWAMMLTVFCI
SHMAYLLVLPSLNPDAGSLGMLLFLLVMTQFNDVAQYVWGKSFGKHKIVPKVSPNKTWQGFIGGTLTVVTVSYFAAPYLT
PLTAAQGLVGGVIIALSGFIGDLVISSVKRDLRIKDTSQFIPGHGGILDRVDSLMFTAPLFFHYLYYLYY

Sequences:

>Translated_310_residues
MLNIPQHSLHLMLVILTILVVGTLCYLWLSRRYPERDYLELKLRIRSWWWMVAIVFVVLQLPLNYTLFFVGFLSFMALKE
FLSIVPTRMTDRRVIFWAYLSIPFQYYWLSIGWYGMFIIFIPVYVFLYLPMVMVLIGDTKGFIRSAGIIHWAMMLTVFCI
SHMAYLLVLPSLNPDAGSLGMLLFLLVMTQFNDVAQYVWGKSFGKHKIVPKVSPNKTWQGFIGGTLTVVTVSYFAAPYLT
PLTAAQGLVGGVIIALSGFIGDLVISSVKRDLRIKDTSQFIPGHGGILDRVDSLMFTAPLFFHYLYYLYY
>Mature_310_residues
MLNIPQHSLHLMLVILTILVVGTLCYLWLSRRYPERDYLELKLRIRSWWWMVAIVFVVLQLPLNYTLFFVGFLSFMALKE
FLSIVPTRMTDRRVIFWAYLSIPFQYYWLSIGWYGMFIIFIPVYVFLYLPMVMVLIGDTKGFIRSAGIIHWAMMLTVFCI
SHMAYLLVLPSLNPDAGSLGMLLFLLVMTQFNDVAQYVWGKSFGKHKIVPKVSPNKTWQGFIGGTLTVVTVSYFAAPYLT
PLTAAQGLVGGVIIALSGFIGDLVISSVKRDLRIKDTSQFIPGHGGILDRVDSLMFTAPLFFHYLYYLYY

Specific function: Unknown

COG id: COG4589

COG function: function code R; Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CDS family [H]

Homologues:

Organism=Escherichia coli, GI1787677, Length=297, Percent_Identity=43.4343434343434, Blast_Score=248, Evalue=4e-67,
Organism=Escherichia coli, GI87081696, Length=124, Percent_Identity=45.9677419354839, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000374 [H]

Pfam domain/function: PF01148 CTP_transf_1 [H]

EC number: NA

Molecular weight: Translated: 35660; Mature: 35660

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS01315 CDS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIPQHSLHLMLVILTILVVGTLCYLWLSRRYPERDYLELKLRIRSWWWMVAIVFVVLQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LPLNYTLFFVGFLSFMALKEFLSIVPTRMTDRRVIFWAYLSIPFQYYWLSIGWYGMFIIF
HCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCHHHHHHHHHHHHHHHHH
IPVYVFLYLPMVMVLIGDTKGFIRSAGIIHWAMMLTVFCISHMAYLLVLPSLNPDAGSLG
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
MLLFLLVMTQFNDVAQYVWGKSFGKHKIVPKVSPNKTWQGFIGGTLTVVTVSYFAAPYLT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHH
PLTAAQGLVGGVIIALSGFIGDLVISSVKRDLRIKDTSQFIPGHGGILDRVDSLMFTAPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
FFHYLYYLYY
HHHHHHHHCC
>Mature Secondary Structure
MLNIPQHSLHLMLVILTILVVGTLCYLWLSRRYPERDYLELKLRIRSWWWMVAIVFVVLQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LPLNYTLFFVGFLSFMALKEFLSIVPTRMTDRRVIFWAYLSIPFQYYWLSIGWYGMFIIF
HCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHCCHHHHHHHHHHHHHHHHH
IPVYVFLYLPMVMVLIGDTKGFIRSAGIIHWAMMLTVFCISHMAYLLVLPSLNPDAGSLG
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
MLLFLLVMTQFNDVAQYVWGKSFGKHKIVPKVSPNKTWQGFIGGTLTVVTVSYFAAPYLT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHH
PLTAAQGLVGGVIIALSGFIGDLVISSVKRDLRIKDTSQFIPGHGGILDRVDSLMFTAPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHH
FFHYLYYLYY
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097039 [H]