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The map label for this gene is yciR [C]

Identifier: 227082064

GI number: 227082064

Start: 2021799

End: 2023766

Strand: Direct

Name: yciR [C]

Synonym: VCM66_1858

Alternate gene names: 227082064

Gene position: 2021799-2023766 (Clockwise)

Preceding gene: 227082063

Following gene: 227082065

Centisome position: 69.9

GC content: 43.24

Gene sequence:

>1968_bases
TTGGCAGATCAGCAGTATAGAAATCATCACTCCTTAACGACGATGAAGAAGTCTCTACTTGCATTTTTCACGCTAGTATT
CGTCATGGTCTTGCTGTCAATCTGGGCCATGGTTCGCTTTACTAATACTTATAATATGCTCACCAAGTACACCCAACTGG
CGGCTTGGTCTTTGGCGCAATTGGAAGTAGAGACGCTCAATTTTACTCATAGATTGGAGACTTACTTATTAAATGGCAGC
CGTGAAAATCATCAAGCGATGAGTCTTAATTACGATATTTTGTGGAATCGTTTCGATCTCTTTCTAACGAGTAAAGAAAC
CCAAGAACTCCGACAACAACACGATGCGCAAGCCATCATTCAAGAGGTGTTCACTCAACTCAAACGCTATGAACTGGCAG
TAAGTCGAGGTGATCAACCCGTACTGCAAGAATTGCTGCAGCTCCTCGAGCCCTACAATGCCCAAATCCGCAATTTAGCG
ATTGTCAATTTTACGGGTGAAAGTGCCAACAGCAATATCCGTATGATTAACGAGAATAAACAGCAGTTACTCTATTTCTT
CGCAGCGATTCTGCTGATGTTAATCTTGCTTTCCTATATGACTTATCGTTCTGCAGATTATCAACAATTTCTCGCATGGC
ATGACCCACTCACTCGGCTAAAAAACCGTAACTTTATCGTTAAAAAACTAAAGAAAAGACGCCGAAATCAACAAGAACCT
ATCGCGCTTATCCTGTTCGATCTTAATCGATTCAAAGAGTTGAATGATACGATGGGTTACGCTTTTGGCGACCAGTTGCT
GATTAACATTGCGGAATTACTTACCCAACGCTGTCGCTCATTTGCTTATCAATGCGCCCGGATTGGTGCTGATGAATTTG
CCGTTTTACTGCATCCTTGTACCGGAAATGCCGACTTTTTTATCCGTAACTTGTGGAATGACTTGACCAAATTAGTACAA
GAGAATGATCCGACCAAACGTTTGAGTGTCGCGATGGGCGTTGTGACCTGCCAAACCCAAGACTTCACTGAGAGCAGCTC
AAAATTACGAGCGAGCAGTTTATTAAACAATGCGGATTTAGCGCTCAATATCGCCAAAAAAGCACCTGAAGGTCAGGTGG
TGTACTATACGCGCGACATTGAAAGTGCTTACAACAAGAAGCGTATCCTCGCTGAGCAGCTACAGCAGTTGCTGTTAGAC
CCAAACCAATCGAGCTTGTATTTATCCTATCAACCTATCTTGTCGCGCGATCCTGACCGACTAGGATGTGAGGCGCTGAT
CCGTTGGCAGCACAGTGAGTTTGGTTATATCAATCCGCAATATCTGATCGAGATTGCCGAAGAGTATGGACTTGGTAAAA
AGCTCGGGGCATGGATCATGCAGCAGGTCTATTTGGCACTACAAAATGATTGGAAACCTCACAACCGCCGATTAGATGTC
TCGATCAACCTTTCCAACTCTCTGTTTGATGAAACCTTGCCAACACTCGTTACCACGATTTTTGGCCATCATGAGAATTT
CCTCAATGCGATCATATTAGAACTAACTGAAACCATGACCATTGATGATTTTCCGCAAAGTCTCGCCATCATCGAGTCAC
TAGAAAAAATGAAAGTTCGCTTTGCACTCGATGATTTCGGAACCGGATGGTCTTCGCTCTACCAACTCAACCACCTTAAA
TTCAGTAAATTGAAGATAGATAAATCCTTTGTCGACAATATGAATCAAAACCAGCAACAAGCGATTTTTATTGCTTCCAT
CGTTAATCTCTCCCATCAACTGGGGATGCAGGTGGTGGCCGAGGGAATCGAACAGTTGGCGCAATTAGAGCAGCTCAAAC
AATTGGGGGTAGATGAATTTCAAGGCTACTATTTCTCTCGTCCTATCACTAAAACCGAGTTCGCCACTTTTTGCGATCAC
TACTTTTCCTCAGAGAATACCTCGTTATCCACGCAAATTAATGAGTAA

Upstream 100 bases:

>100_bases
GCAAACCGATGCAGATCCGTGACCGTGGACCAATTTGGTCAATCTATCCACTCAGTAGTAGTGGCGAGTTAGACAATGAA
ATACTGCACAGCCGTATGGT

Downstream 100 bases:

>100_bases
TGCATTAGCAATACAATGCAACAAGATTGAGACGCGTGCCAAAAAACAGGTAACCCTACTTGGTATGACTTCTTTTCAGT
GCGGATTGGTGGTACCACAT

Product: GGDEF/EAL family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 655; Mature: 654

Protein sequence:

>655_residues
MADQQYRNHHSLTTMKKSLLAFFTLVFVMVLLSIWAMVRFTNTYNMLTKYTQLAAWSLAQLEVETLNFTHRLETYLLNGS
RENHQAMSLNYDILWNRFDLFLTSKETQELRQQHDAQAIIQEVFTQLKRYELAVSRGDQPVLQELLQLLEPYNAQIRNLA
IVNFTGESANSNIRMINENKQQLLYFFAAILLMLILLSYMTYRSADYQQFLAWHDPLTRLKNRNFIVKKLKKRRRNQQEP
IALILFDLNRFKELNDTMGYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADFFIRNLWNDLTKLVQ
ENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYYTRDIESAYNKKRILAEQLQQLLLD
PNQSSLYLSYQPILSRDPDRLGCEALIRWQHSEFGYINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPHNRRLDV
SINLSNSLFDETLPTLVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSSLYQLNHLK
FSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQLKQLGVDEFQGYYFSRPITKTEFATFCDH
YFSSENTSLSTQINE

Sequences:

>Translated_655_residues
MADQQYRNHHSLTTMKKSLLAFFTLVFVMVLLSIWAMVRFTNTYNMLTKYTQLAAWSLAQLEVETLNFTHRLETYLLNGS
RENHQAMSLNYDILWNRFDLFLTSKETQELRQQHDAQAIIQEVFTQLKRYELAVSRGDQPVLQELLQLLEPYNAQIRNLA
IVNFTGESANSNIRMINENKQQLLYFFAAILLMLILLSYMTYRSADYQQFLAWHDPLTRLKNRNFIVKKLKKRRRNQQEP
IALILFDLNRFKELNDTMGYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADFFIRNLWNDLTKLVQ
ENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYYTRDIESAYNKKRILAEQLQQLLLD
PNQSSLYLSYQPILSRDPDRLGCEALIRWQHSEFGYINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPHNRRLDV
SINLSNSLFDETLPTLVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSSLYQLNHLK
FSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQLKQLGVDEFQGYYFSRPITKTEFATFCDH
YFSSENTSLSTQINE
>Mature_654_residues
ADQQYRNHHSLTTMKKSLLAFFTLVFVMVLLSIWAMVRFTNTYNMLTKYTQLAAWSLAQLEVETLNFTHRLETYLLNGSR
ENHQAMSLNYDILWNRFDLFLTSKETQELRQQHDAQAIIQEVFTQLKRYELAVSRGDQPVLQELLQLLEPYNAQIRNLAI
VNFTGESANSNIRMINENKQQLLYFFAAILLMLILLSYMTYRSADYQQFLAWHDPLTRLKNRNFIVKKLKKRRRNQQEPI
ALILFDLNRFKELNDTMGYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPCTGNADFFIRNLWNDLTKLVQE
NDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADLALNIAKKAPEGQVVYYTRDIESAYNKKRILAEQLQQLLLDP
NQSSLYLSYQPILSRDPDRLGCEALIRWQHSEFGYINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPHNRRLDVS
INLSNSLFDETLPTLVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVRFALDDFGTGWSSLYQLNHLKF
SKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVAEGIEQLAQLEQLKQLGVDEFQGYYFSRPITKTEFATFCDHY
FSSENTSLSTQINE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=447, Percent_Identity=28.6353467561521, Blast_Score=169, Evalue=4e-43,
Organism=Escherichia coli, GI87081921, Length=435, Percent_Identity=27.3563218390805, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=34.1772151898734, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1790496, Length=256, Percent_Identity=31.25, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI226510982, Length=430, Percent_Identity=26.9767441860465, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI1786507, Length=276, Percent_Identity=30.4347826086957, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI87081845, Length=255, Percent_Identity=32.5490196078431, Blast_Score=110, Evalue=4e-25,
Organism=Escherichia coli, GI87081980, Length=240, Percent_Identity=31.6666666666667, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1788502, Length=285, Percent_Identity=25.9649122807018, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1788849, Length=279, Percent_Identity=28.3154121863799, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1787055, Length=231, Percent_Identity=29.8701298701299, Blast_Score=93, Evalue=7e-20,
Organism=Escherichia coli, GI87082096, Length=230, Percent_Identity=28.695652173913, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1788381, Length=438, Percent_Identity=24.6575342465753, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=31.3953488372093, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787262, Length=194, Percent_Identity=25.7731958762887, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 76010; Mature: 75879

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADQQYRNHHSLTTMKKSLLAFFTLVFVMVLLSIWAMVRFTNTYNMLTKYTQLAAWSLAQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEVETLNFTHRLETYLLNGSRENHQAMSLNYDILWNRFDLFLTSKETQELRQQHDAQAII
EEHHHHHHHHHHHHHHCCCCCCCCCEEEECHHEEECCEEEEEECHHHHHHHHHHHHHHHH
QEVFTQLKRYELAVSRGDQPVLQELLQLLEPYNAQIRNLAIVNFTGESANSNIRMINENK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCEEEECCCH
QQLLYFFAAILLMLILLSYMTYRSADYQQFLAWHDPLTRLKNRNFIVKKLKKRRRNQQEP
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
IALILFDLNRFKELNDTMGYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPC
EEEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
TGNADFFIRNLWNDLTKLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADL
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCCC
ALNIAKKAPEGQVVYYTRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRDPDR
EEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHCCCCCH
LGCEALIRWQHSEFGYINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPHNRRLDV
HCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEE
SINLSNSLFDETLPTLVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVR
EEECCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
FALDDFGTGWSSLYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVA
EEHHHCCCCHHHHHHHCCCCHHHHEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EGIEQLAQLEQLKQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTSLSTQINE
HHHHHHHHHHHHHHCCCHHHCCEEECCCCCHHHHHHHHHHHHCCCCCEECCCCCC
>Mature Secondary Structure 
ADQQYRNHHSLTTMKKSLLAFFTLVFVMVLLSIWAMVRFTNTYNMLTKYTQLAAWSLAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEVETLNFTHRLETYLLNGSRENHQAMSLNYDILWNRFDLFLTSKETQELRQQHDAQAII
EEHHHHHHHHHHHHHHCCCCCCCCCEEEECHHEEECCEEEEEECHHHHHHHHHHHHHHHH
QEVFTQLKRYELAVSRGDQPVLQELLQLLEPYNAQIRNLAIVNFTGESANSNIRMINENK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCEEEECCCH
QQLLYFFAAILLMLILLSYMTYRSADYQQFLAWHDPLTRLKNRNFIVKKLKKRRRNQQEP
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
IALILFDLNRFKELNDTMGYAFGDQLLINIAELLTQRCRSFAYQCARIGADEFAVLLHPC
EEEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
TGNADFFIRNLWNDLTKLVQENDPTKRLSVAMGVVTCQTQDFTESSSKLRASSLLNNADL
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHCCCCC
ALNIAKKAPEGQVVYYTRDIESAYNKKRILAEQLQQLLLDPNQSSLYLSYQPILSRDPDR
EEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHCCCCCH
LGCEALIRWQHSEFGYINPQYLIEIAEEYGLGKKLGAWIMQQVYLALQNDWKPHNRRLDV
HCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEE
SINLSNSLFDETLPTLVTTIFGHHENFLNAIILELTETMTIDDFPQSLAIIESLEKMKVR
EEECCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
FALDDFGTGWSSLYQLNHLKFSKLKIDKSFVDNMNQNQQQAIFIASIVNLSHQLGMQVVA
EEHHHCCCCHHHHHHHCCCCHHHHEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EGIEQLAQLEQLKQLGVDEFQGYYFSRPITKTEFATFCDHYFSSENTSLSTQINE
HHHHHHHHHHHHHHCCCHHHCCEEECCCCCHHHHHHHHHHHHCCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]