Click here to switch to the map view.

The map label for this gene is ydiU [C]

Identifier: 227082061

GI number: 227082061

Start: 2019336

End: 2020862

Strand: Reverse

Name: ydiU [C]

Synonym: VCM66_1855

Alternate gene names: 227082061

Gene position: 2020862-2019336 (Counterclockwise)

Preceding gene: 227082062

Following gene: 227082060

Centisome position: 69.87

GC content: 50.49

Gene sequence:

>1527_bases
GTGAAAAGGTCAAGTATTTGCTACCGTGCGAGCAAACCATTGATCGCGAGTCTAGTTATGTCAGTGTGGAATGCTGTTCA
TCTTAGCCGACGTTTTGCGGCGTTACCCCAAGCTTTTTATACCCCAGTTCATCCTCAGCCTTTGCAAAATGTACGTTGGG
GGATGTGGAATAGTCGTTTGGCGCAACAATTTGGTTTGCCTGAAGCACCGAATGATGAGTTATTGTTATCGCTGTCAGGG
CAGCAGCTACCTGCTGATTTTTCTCCCGTCGCGATGAAATACGCAGGACATCAATTTGGGGTGTATAACCCCGATTTAGG
CGATGGGCGCGGTTTATTATTGGCGGAAATGGCGACCAAGCAGGGCGAAGTGTTTGATATTCATCTCAAGGGCGCAGGGC
TTACGCCTTATTCACGAATGGGGGATGGGCGAGCGGTGCTGCGTTCATCCCTTCGTGAATATTTGTGCAGTGAAGCGATG
GCAGGACTCGGCATTGCCACGACCCGCGCATTAGCGCTAATGAGTAGTGAAACGCCAGTTTATCGAGAGCGTGAAGAGCG
CGGCGCACTCTTGGTACGTTTAGCCCATACCCATGTGCGGTTTGGCCATTTCGAGCATTTCTTTTACACCGATCAGCATG
CGAACCTGAAATTACTGGCGGATAAAGTCATCGAATGGCATTTCCCAGATTGCGTGCAAACATCGAAACCTTATGCGGCT
TGGTTTTCGCAAGTGGTTGAGCGCACTGCACTGATGATTGCGCAGTGGCAAGCGTACGGCTTTAACCACGGGGTGATGAA
TACCGATAATATGTCGATTCTCGGGGAAACCTTTGATTATGGTCCCTTTGCCTTTTTGGATGACTACGATCCGAACTTCA
TCTGTAATCACTCGGATTATCAGGGACGATATGCCTTTGATCAGCAGCCACGCATTGGCCTTTGGAACCTCTCCGCATTA
GCGCATGCGCTGTCACCTTTGATCGACAAAGATGATTTAGAAGCCGCACTGGGGAGTTATTCAGAACGCCTCAATCTGCA
TTTCAGCCGTTTGATGCGCGCGAAACTTGGTTTAGCGACTCAGCAAGAGGGGGATGGCGAGTTGTTTGCTGATTTCTTCG
CGCTACTGGCCAACAATCACACCGATTACACGCGCTTTTTACGCGAGCTCTCCTGTCTGGATCGGCAAGGAAACGAGGCG
GTGATCGATTTGGTGTTAGATCGCGAAGCGGCTAAGACCTGGTTAACCCGTTATCTTGAGCGCGCTGCTCGTGAGTTAGG
TCAAGAGGGGCGACCCATCAGCACCCGTGAGCGCTGCCAAGCCATGCGCCAAGTGAACCCGAAATACATCTTGCGTAACT
ACCTTGCGCAGCAAGCAATTGAGTTTGCTGAACGAGGCGATTTTGAGGAAATGCAACGCTTAGCCACTGTGTTGGCTAGC
CCTTATGCCGAGCATCCCGAGTTTGAACGTTACGCAAAGTTACCGCCAGAATGGGGGAAAAAACTGGAGATCAGTTGTTC
TTCCTAA

Upstream 100 bases:

>100_bases
GAGCTGCCTTCTAACACCTTTGGTAAGCATAGGAAGAAAGGGGACGTTGAGCGAGAGGTTCGGGTTATCTTTCTCCACAA
CGTCAGCACAATAAAACCTA

Downstream 100 bases:

>100_bases
GGCCGGTTATGTATGGGTGGAAAGTGACCCATTACTGAAATTGGATGGGTGGATTTCCACCCATTTTTTATGGCAGAAAC
CTCGAACACAAGAGAGGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MKRSSICYRASKPLIASLVMSVWNAVHLSRRFAALPQAFYTPVHPQPLQNVRWGMWNSRLAQQFGLPEAPNDELLLSLSG
QQLPADFSPVAMKYAGHQFGVYNPDLGDGRGLLLAEMATKQGEVFDIHLKGAGLTPYSRMGDGRAVLRSSLREYLCSEAM
AGLGIATTRALALMSSETPVYREREERGALLVRLAHTHVRFGHFEHFFYTDQHANLKLLADKVIEWHFPDCVQTSKPYAA
WFSQVVERTALMIAQWQAYGFNHGVMNTDNMSILGETFDYGPFAFLDDYDPNFICNHSDYQGRYAFDQQPRIGLWNLSAL
AHALSPLIDKDDLEAALGSYSERLNLHFSRLMRAKLGLATQQEGDGELFADFFALLANNHTDYTRFLRELSCLDRQGNEA
VIDLVLDREAAKTWLTRYLERAARELGQEGRPISTRERCQAMRQVNPKYILRNYLAQQAIEFAERGDFEEMQRLATVLAS
PYAEHPEFERYAKLPPEWGKKLEISCSS

Sequences:

>Translated_508_residues
MKRSSICYRASKPLIASLVMSVWNAVHLSRRFAALPQAFYTPVHPQPLQNVRWGMWNSRLAQQFGLPEAPNDELLLSLSG
QQLPADFSPVAMKYAGHQFGVYNPDLGDGRGLLLAEMATKQGEVFDIHLKGAGLTPYSRMGDGRAVLRSSLREYLCSEAM
AGLGIATTRALALMSSETPVYREREERGALLVRLAHTHVRFGHFEHFFYTDQHANLKLLADKVIEWHFPDCVQTSKPYAA
WFSQVVERTALMIAQWQAYGFNHGVMNTDNMSILGETFDYGPFAFLDDYDPNFICNHSDYQGRYAFDQQPRIGLWNLSAL
AHALSPLIDKDDLEAALGSYSERLNLHFSRLMRAKLGLATQQEGDGELFADFFALLANNHTDYTRFLRELSCLDRQGNEA
VIDLVLDREAAKTWLTRYLERAARELGQEGRPISTRERCQAMRQVNPKYILRNYLAQQAIEFAERGDFEEMQRLATVLAS
PYAEHPEFERYAKLPPEWGKKLEISCSS
>Mature_508_residues
MKRSSICYRASKPLIASLVMSVWNAVHLSRRFAALPQAFYTPVHPQPLQNVRWGMWNSRLAQQFGLPEAPNDELLLSLSG
QQLPADFSPVAMKYAGHQFGVYNPDLGDGRGLLLAEMATKQGEVFDIHLKGAGLTPYSRMGDGRAVLRSSLREYLCSEAM
AGLGIATTRALALMSSETPVYREREERGALLVRLAHTHVRFGHFEHFFYTDQHANLKLLADKVIEWHFPDCVQTSKPYAA
WFSQVVERTALMIAQWQAYGFNHGVMNTDNMSILGETFDYGPFAFLDDYDPNFICNHSDYQGRYAFDQQPRIGLWNLSAL
AHALSPLIDKDDLEAALGSYSERLNLHFSRLMRAKLGLATQQEGDGELFADFFALLANNHTDYTRFLRELSCLDRQGNEA
VIDLVLDREAAKTWLTRYLERAARELGQEGRPISTRERCQAMRQVNPKYILRNYLAQQAIEFAERGDFEEMQRLATVLAS
PYAEHPEFERYAKLPPEWGKKLEISCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=389, Percent_Identity=41.3881748071979, Blast_Score=263, Evalue=3e-70,
Organism=Escherichia coli, GI1787999, Length=475, Percent_Identity=49.6842105263158, Blast_Score=460, Evalue=1e-130,
Organism=Saccharomyces cerevisiae, GI6325034, Length=321, Percent_Identity=36.7601246105919, Blast_Score=186, Evalue=7e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 57736; Mature: 57736

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSSICYRASKPLIASLVMSVWNAVHLSRRFAALPQAFYTPVHPQPLQNVRWGMWNSRL
CCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHCCCHHHHH
AQQFGLPEAPNDELLLSLSGQQLPADFSPVAMKYAGHQFGVYNPDLGDGRGLLLAEMATK
HHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHCC
QGEVFDIHLKGAGLTPYSRMGDGRAVLRSSLREYLCSEAMAGLGIATTRALALMSSETPV
CCCEEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCH
YREREERGALLVRLAHTHVRFGHFEHFFYTDQHANLKLLADKVIEWHFPDCVQTSKPYAA
HHHHHHCCCEEEEEHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCCHHHHCCCCHHH
WFSQVVERTALMIAQWQAYGFNHGVMNTDNMSILGETFDYGPFAFLDDYDPNFICNHSDY
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCEEECCCCC
QGRYAFDQQPRIGLWNLSALAHALSPLIDKDDLEAALGSYSERLNLHFSRLMRAKLGLAT
CCCEECCCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QQEGDGELFADFFALLANNHTDYTRFLRELSCLDRQGNEAVIDLVLDREAAKTWLTRYLE
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHH
RAARELGQEGRPISTRERCQAMRQVNPKYILRNYLAQQAIEFAERGDFEEMQRLATVLAS
HHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
PYAEHPEFERYAKLPPEWGKKLEISCSS
CCCCCCCHHHHHCCCCCCCCEEEEEECC
>Mature Secondary Structure
MKRSSICYRASKPLIASLVMSVWNAVHLSRRFAALPQAFYTPVHPQPLQNVRWGMWNSRL
CCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHCCCHHHHH
AQQFGLPEAPNDELLLSLSGQQLPADFSPVAMKYAGHQFGVYNPDLGDGRGLLLAEMATK
HHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHCC
QGEVFDIHLKGAGLTPYSRMGDGRAVLRSSLREYLCSEAMAGLGIATTRALALMSSETPV
CCCEEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCH
YREREERGALLVRLAHTHVRFGHFEHFFYTDQHANLKLLADKVIEWHFPDCVQTSKPYAA
HHHHHHCCCEEEEEHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHCCCCHHHHCCCCHHH
WFSQVVERTALMIAQWQAYGFNHGVMNTDNMSILGETFDYGPFAFLDDYDPNFICNHSDY
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCEEECCCCC
QGRYAFDQQPRIGLWNLSALAHALSPLIDKDDLEAALGSYSERLNLHFSRLMRAKLGLAT
CCCEECCCCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
QQEGDGELFADFFALLANNHTDYTRFLRELSCLDRQGNEAVIDLVLDREAAKTWLTRYLE
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHH
RAARELGQEGRPISTRERCQAMRQVNPKYILRNYLAQQAIEFAERGDFEEMQRLATVLAS
HHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
PYAEHPEFERYAKLPPEWGKKLEISCSS
CCCCCCCHHHHHCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]