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The map label for this gene is ybaV [H]

Identifier: 227082047

GI number: 227082047

Start: 2003470

End: 2003781

Strand: Reverse

Name: ybaV [H]

Synonym: VCM66_1841

Alternate gene names: 227082047

Gene position: 2003781-2003470 (Counterclockwise)

Preceding gene: 227082048

Following gene: 227082046

Centisome position: 69.27

GC content: 46.79

Gene sequence:

>312_bases
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Upstream 100 bases:

>100_bases
GGGCTACAGCAGTAGCCCGTTCTATTTATAAATTGTCGAAATTTCCATCATTTTTCCCCTCGCTATCATAAGCCCTCAAC
AACCAAAATGAGGGTCTATC

Downstream 100 bases:

>100_bases
GCTGCAATCATGTGTCTCGTAATAACTCGGCTTCGGCCGAGTTAATTTTTTAACTCAGTAGCCTTTTTATGGTTAATCAG
GACTCTTACCTAGCACCAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Sequences:

>Translated_103_residues
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
>Mature_103_residues
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=85, Percent_Identity=50.5882352941176, Blast_Score=73, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10967; Mature: 10967

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEEEEECCCCHHHHHHHHHCCC
LKKAQAIVDYREANGPFTHIDDLTNVKGIGEATVRNNAARILL
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCEEECC
>Mature Secondary Structure
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIG
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEEEEECCCCHHHHHHHHHCCC
LKKAQAIVDYREANGPFTHIDDLTNVKGIGEATVRNNAARILL
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]