| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is 227082015
Identifier: 227082015
GI number: 227082015
Start: 1966882
End: 1967457
Strand: Direct
Name: 227082015
Synonym: VCM66_1809
Alternate gene names: NA
Gene position: 1966882-1967457 (Clockwise)
Preceding gene: 227082011
Following gene: 227082016
Centisome position: 68.0
GC content: 48.61
Gene sequence:
>576_bases ATGAATGACCAAGAATTCTTTACTGTTCACCACGCGCTAACCATCAATGTGGAACCGTTGGCGGAGCATTTCACCCTACC TTCTCATGAGATTTTTGAAGCGGAGATCCCCGCGCCATTTGTGGTCGCCAGCGAATTTAGCCAGTTGGAACAACTCAGTG ATAGCGCACGCATGGAGCTGAAAAACAGTGACTTTAAAAGCGTATTGCAACTGCTTGAAGCGCAAAATGCCAAACTGAAT CTACTGCTGACTTTTATGCTGTCACAACAAGATGATCCTCAATCACGCAGTGCGACCACTCGTTTTGGTGCCAGTCAACT GACCTATTTGGCCAAATCACCACTGCAGATTGGACAAAAAGTGCGGGTAAAACTGTTTTTGGAATACCCCGCCGCCGCGA TTTATTGCTACGCCAGTGTGATGCAATGCCAGCAAGAACCTGAGCACACCTTAGTGACTCTCAAGTACGATCTGCTGCGC GATGTGGATCAAGATTTGCTGATCAAAGCCGCTCTCTACCAACAGCAGCGCCTGCTGCGTCAACGCTCACTAGACCGAGA AAAACCTCAAGCGTGA
Upstream 100 bases:
>100_bases CTGTGTAAGAGAACGTTTATTTCACACCCATAACAAGGACATACCTTGATTAGTTACTGCTTATGACGATAATCAACACA GATGTGAGAAGGAACCCTCT
Downstream 100 bases:
>100_bases CTATGACTACACACTCTTTACTCTCTCTGTTTTCGGCGCAAGGTGCCGGAGACAAAAAAGCCATCGGTAATTTACACGGC GCAAGTTTAGCGCTGGCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 191; Mature: 191
Protein sequence:
>191_residues MNDQEFFTVHHALTINVEPLAEHFTLPSHEIFEAEIPAPFVVASEFSQLEQLSDSARMELKNSDFKSVLQLLEAQNAKLN LLLTFMLSQQDDPQSRSATTRFGASQLTYLAKSPLQIGQKVRVKLFLEYPAAAIYCYASVMQCQQEPEHTLVTLKYDLLR DVDQDLLIKAALYQQQRLLRQRSLDREKPQA
Sequences:
>Translated_191_residues MNDQEFFTVHHALTINVEPLAEHFTLPSHEIFEAEIPAPFVVASEFSQLEQLSDSARMELKNSDFKSVLQLLEAQNAKLN LLLTFMLSQQDDPQSRSATTRFGASQLTYLAKSPLQIGQKVRVKLFLEYPAAAIYCYASVMQCQQEPEHTLVTLKYDLLR DVDQDLLIKAALYQQQRLLRQRSLDREKPQA >Mature_191_residues MNDQEFFTVHHALTINVEPLAEHFTLPSHEIFEAEIPAPFVVASEFSQLEQLSDSARMELKNSDFKSVLQLLEAQNAKLN LLLTFMLSQQDDPQSRSATTRFGASQLTYLAKSPLQIGQKVRVKLFLEYPAAAIYCYASVMQCQQEPEHTLVTLKYDLLR DVDQDLLIKAALYQQQRLLRQRSLDREKPQA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21885; Mature: 21885
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDQEFFTVHHALTINVEPLAEHFTLPSHEIFEAEIPAPFVVASEFSQLEQLSDSARMEL CCCCCEEEEEEEEEEEEHHHHHHCCCCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHH KNSDFKSVLQLLEAQNAKLNLLLTFMLSQQDDPQSRSATTRFGASQLTYLAKSPLQIGQK CCCCHHHHHHHHHHCCCCCEEHEEEECCCCCCCCCCHHHHHCCHHHHHHHHHCHHHHCCC VRVKLFLEYPAAAIYCYASVMQCQQEPEHTLVTLKYDLLRDVDQDLLIKAALYQQQRLLR EEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHH QRSLDREKPQA HHCCCCCCCCC >Mature Secondary Structure MNDQEFFTVHHALTINVEPLAEHFTLPSHEIFEAEIPAPFVVASEFSQLEQLSDSARMEL CCCCCEEEEEEEEEEEEHHHHHHCCCCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHH KNSDFKSVLQLLEAQNAKLNLLLTFMLSQQDDPQSRSATTRFGASQLTYLAKSPLQIGQK CCCCHHHHHHHHHHCCCCCEEHEEEECCCCCCCCCCHHHHHCCHHHHHHHHHCHHHHCCC VRVKLFLEYPAAAIYCYASVMQCQQEPEHTLVTLKYDLLRDVDQDLLIKAALYQQQRLLR EEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHH QRSLDREKPQA HHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA