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The map label for this gene is ycgB [H]

Identifier: 227082003

GI number: 227082003

Start: 1954713

End: 1956263

Strand: Direct

Name: ycgB [H]

Synonym: VCM66_1797

Alternate gene names: 227082003

Gene position: 1954713-1956263 (Clockwise)

Preceding gene: 227082002

Following gene: 227082010

Centisome position: 67.58

GC content: 46.81

Gene sequence:

>1551_bases
ATGACTACCAAAGCCAAAGCCGCACCTAAGCGTAAAGTAGCGAACAGTAAGCGACTGCCCGATGGCCCAGATTGGACGTT
TGAACTGATCGAGCGCTACCATCAAGAAATCCGTCGCGTGGCAGAGCTTTATCGTTTGGACACTTACCCAAACCAGATTG
AGATCATCACCTCAGAGCAGATGATGGATGCCTATTCCAGCATCGGCATGCCAATCAACTACAACCATTGGTCGTTTGGT
AAAAAATTCATTCAAACCGAGCAAACCTACAAACATGGTCAGATGGGGTTGGCATACGAAATTGTGATTAACTCCGATCC
TTGTATCGCCTATCTAATGGAAGAAAACACCGTAACCATGCAAGCGCTGGTGATGGCGCATGCCTGTTACGGCCACAACT
CCTTCTTCAAAGGCAACTATCTATTCCAAACCTGGACAGATGCCAGCTCGATCATCGATTACCTGCTGTTTGCCAAAAAC
TACATTGCTGAGTGTGAGCAGAAATTTGGCGTGAACGAAGTGGAAAAGCTACTCGACTCTTGCCATGCGCTAATGAATTA
CGGGGTTGACCGTTATAAACGCCCCGAAAAAATCTCGATTGCCGAAGAAAAAGCGCGTCAAGAAGAGCGCGAAGCTTATC
TGCAATCACAAGTGAATGCCTTATGGCGTACCGTACCGAAAAAAGCCGTAGAGCAAGAAAAGCAGCGCCGCTTCCCGAGT
GAACCACAAGAAAACATTCTCTATTTTATTGAGAAACACGCCCCTTTGCTGGAGCCTTGGCAACGTGAAATCGTGCGTAT
TGTGCGTAAAGTCAGCCAGTATTTTTATCCACAAAAGCAGACGCAAGTCATGAACGAAGGATGGGCGACGTTTTGGCACT
ACACCATACTCAACCATCTTTATGATGAAGGCTTACTCAGCGACAAGTTCATGCTGGAGTTTTTGCACAGTCACACCAGC
GTTGTGGCACAGCCGCCCTACAACAGCCGTTATTTCAGTGGCATTAACCCTTATGCACTCGGTTTTGCCATGTTCCGTGA
TATTAAGCGGATCTGCGAAGAGCCGACCGAGGAAGATAAAGAGTGGTTCCCAGAGTTGGCCGGCGCAAACTGGTTGGATG
CGCTTCATTTTGCGATGCGCAACTTTAAAGATGAGAGCTTTATCAGCCAATATCTGTCACCTAAGCTGATCCGCGACTTT
AAGTTCTTTGCGATTTGCGATGATGATAGAAAAAATCACATTGAAATCAGTGCTATTCACGATGATCTCGGATATCAACA
AATCCGCGAGAAACTCGCGGCGCAATACAATCTCAGTAATCTTGAACCCAACATTCAAGTGTATAGCGTTGATGTTCGAG
GCGACCGTTCGTTAACCTTGCAGTATGTACCACACGATCGTATTCCGTTAGATCCAAGCTACGAGGAGGTGCTAAAACAC
TTGCACCGTCTATGGGGTTTTGAAGTCAAACTGGAGGAGGTCAAAGACACAGGAAGAAGAGAGATCCTCGCAACCTGCCC
CAAAAAGAACGACTCGGAAAGTCGAATCTAA

Upstream 100 bases:

>100_bases
CTTCGATAACTTCGCGATGAAGAACATCCGCAGTGTTGAAGATATTTTCCCTGTGTTTAGGGAGCTGTTCCAAAAGGAAA
ATGCGTAGGGAGATTGTGAG

Downstream 100 bases:

>100_bases
GTACTGGGGCTGCAATACAACATCCCTAACACTTAATAAAAATCCGCCTTCTTAGAAGGCGGTTTTAATATAAGCCCCCT
AAAAGGGGGCCACGGCGCTG

Product: SpoVR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 515

Protein sequence:

>516_residues
MTTKAKAAPKRKVANSKRLPDGPDWTFELIERYHQEIRRVAELYRLDTYPNQIEIITSEQMMDAYSSIGMPINYNHWSFG
KKFIQTEQTYKHGQMGLAYEIVINSDPCIAYLMEENTVTMQALVMAHACYGHNSFFKGNYLFQTWTDASSIIDYLLFAKN
YIAECEQKFGVNEVEKLLDSCHALMNYGVDRYKRPEKISIAEEKARQEEREAYLQSQVNALWRTVPKKAVEQEKQRRFPS
EPQENILYFIEKHAPLLEPWQREIVRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGLLSDKFMLEFLHSHTS
VVAQPPYNSRYFSGINPYALGFAMFRDIKRICEEPTEEDKEWFPELAGANWLDALHFAMRNFKDESFISQYLSPKLIRDF
KFFAICDDDRKNHIEISAIHDDLGYQQIREKLAAQYNLSNLEPNIQVYSVDVRGDRSLTLQYVPHDRIPLDPSYEEVLKH
LHRLWGFEVKLEEVKDTGRREILATCPKKNDSESRI

Sequences:

>Translated_516_residues
MTTKAKAAPKRKVANSKRLPDGPDWTFELIERYHQEIRRVAELYRLDTYPNQIEIITSEQMMDAYSSIGMPINYNHWSFG
KKFIQTEQTYKHGQMGLAYEIVINSDPCIAYLMEENTVTMQALVMAHACYGHNSFFKGNYLFQTWTDASSIIDYLLFAKN
YIAECEQKFGVNEVEKLLDSCHALMNYGVDRYKRPEKISIAEEKARQEEREAYLQSQVNALWRTVPKKAVEQEKQRRFPS
EPQENILYFIEKHAPLLEPWQREIVRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGLLSDKFMLEFLHSHTS
VVAQPPYNSRYFSGINPYALGFAMFRDIKRICEEPTEEDKEWFPELAGANWLDALHFAMRNFKDESFISQYLSPKLIRDF
KFFAICDDDRKNHIEISAIHDDLGYQQIREKLAAQYNLSNLEPNIQVYSVDVRGDRSLTLQYVPHDRIPLDPSYEEVLKH
LHRLWGFEVKLEEVKDTGRREILATCPKKNDSESRI
>Mature_515_residues
TTKAKAAPKRKVANSKRLPDGPDWTFELIERYHQEIRRVAELYRLDTYPNQIEIITSEQMMDAYSSIGMPINYNHWSFGK
KFIQTEQTYKHGQMGLAYEIVINSDPCIAYLMEENTVTMQALVMAHACYGHNSFFKGNYLFQTWTDASSIIDYLLFAKNY
IAECEQKFGVNEVEKLLDSCHALMNYGVDRYKRPEKISIAEEKARQEEREAYLQSQVNALWRTVPKKAVEQEKQRRFPSE
PQENILYFIEKHAPLLEPWQREIVRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLYDEGLLSDKFMLEFLHSHTSV
VAQPPYNSRYFSGINPYALGFAMFRDIKRICEEPTEEDKEWFPELAGANWLDALHFAMRNFKDESFISQYLSPKLIRDFK
FFAICDDDRKNHIEISAIHDDLGYQQIREKLAAQYNLSNLEPNIQVYSVDVRGDRSLTLQYVPHDRIPLDPSYEEVLKHL
HRLWGFEVKLEEVKDTGRREILATCPKKNDSESRI

Specific function: Unknown

COG id: COG2719

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis spoVR [H]

Homologues:

Organism=Escherichia coli, GI1787437, Length=497, Percent_Identity=74.8490945674044, Blast_Score=823, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007390 [H]

Pfam domain/function: PF04293 SpoVR [H]

EC number: NA

Molecular weight: Translated: 60883; Mature: 60752

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKAKAAPKRKVANSKRLPDGPDWTFELIERYHQEIRRVAELYRLDTYPNQIEIITSEQ
CCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHH
MMDAYSSIGMPINYNHWSFGKKFIQTEQTYKHGQMGLAYEIVINSDPCIAYLMEENTVTM
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCHHH
QALVMAHACYGHNSFFKGNYLFQTWTDASSIIDYLLFAKNYIAECEQKFGVNEVEKLLDS
HHHHHHHHHHCCCCEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
CHALMNYGVDRYKRPEKISIAEEKARQEEREAYLQSQVNALWRTVPKKAVEQEKQRRFPS
HHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EPQENILYFIEKHAPLLEPWQREIVRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHL
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHH
YDEGLLSDKFMLEFLHSHTSVVAQPPYNSRYFSGINPYALGFAMFRDIKRICEEPTEEDK
HHCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
EWFPELAGANWLDALHFAMRNFKDESFISQYLSPKLIRDFKFFAICDDDRKNHIEISAIH
HHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCHHHHHCCEEEEEECCCCCCCEEEEEEH
DDLGYQQIREKLAAQYNLSNLEPNIQVYSVDVRGDRSLTLQYVPHDRIPLDPSYEEVLKH
HHCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHH
LHRLWGFEVKLEEVKDTGRREILATCPKKNDSESRI
HHHHHCCCEEHHHHHCCCHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TTKAKAAPKRKVANSKRLPDGPDWTFELIERYHQEIRRVAELYRLDTYPNQIEIITSEQ
CCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHH
MMDAYSSIGMPINYNHWSFGKKFIQTEQTYKHGQMGLAYEIVINSDPCIAYLMEENTVTM
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEECCCCHHH
QALVMAHACYGHNSFFKGNYLFQTWTDASSIIDYLLFAKNYIAECEQKFGVNEVEKLLDS
HHHHHHHHHHCCCCEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
CHALMNYGVDRYKRPEKISIAEEKARQEEREAYLQSQVNALWRTVPKKAVEQEKQRRFPS
HHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EPQENILYFIEKHAPLLEPWQREIVRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHL
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHH
YDEGLLSDKFMLEFLHSHTSVVAQPPYNSRYFSGINPYALGFAMFRDIKRICEEPTEEDK
HHCCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
EWFPELAGANWLDALHFAMRNFKDESFISQYLSPKLIRDFKFFAICDDDRKNHIEISAIH
HHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHCHHHHHCCEEEEEECCCCCCCEEEEEEH
DDLGYQQIREKLAAQYNLSNLEPNIQVYSVDVRGDRSLTLQYVPHDRIPLDPSYEEVLKH
HHCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHH
LHRLWGFEVKLEEVKDTGRREILATCPKKNDSESRI
HHHHHCCCEEHHHHHCCCHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7906689 [H]