Click here to switch to the map view.

The map label for this gene is yfbU [C]

Identifier: 227082000

GI number: 227082000

Start: 1950597

End: 1951109

Strand: Direct

Name: yfbU [C]

Synonym: VCM66_1794

Alternate gene names: 227082000

Gene position: 1950597-1951109 (Clockwise)

Preceding gene: 227081999

Following gene: 227082001

Centisome position: 67.44

GC content: 47.37

Gene sequence:

>513_bases
GTGAGGCTTTACATGGAAATGACCAACGCTCAGCGTTTGATCCTATCGAACCAATATTTCCTTATGTCACAACTCGACCC
TAATAACGCAAACAAATACAAGCGCTTACAAACGATTGTTGAGCGTGGCTATGAGCTACACATGCGTGAACTGAACCGCG
AGTTTGGCTGCCTGCCTGAAACCGAGTGTCGTGAAATCATCGACATCATGGAGATGTATCATGCGATGCAAGAATCCAAC
AGAATGCTGGACGATGCCGCACGCAAAGATGTAGATCAACGCCGTTTGACATTCCTAGGCTTTGATATGGCGACCGAAGC
ACAGTTGGTCAATTACGTCCGTTTCTTAGTGGACTCTGAAGGTCTCTATCCTCAGTTTGATAAAGGCGAACACCATTTCA
ACAGCCAAATGCCGATGTTGGCCAAATACCGCCGCATGCTGACCACTTGGCGCAACTGCCCACGCCAATACCATCTGTCA
GGTAATGAATTGCGTCAAATCATGAACGCCTAA

Upstream 100 bases:

>100_bases
TTTTTTTGTGCTTTCACTATTAAAACCGTGTTGAGATCATGTTTCACTCTGCACCAATGCTGTTAACCTTAAATCAGCAA
AATAATAACTCTGATTTGAA

Downstream 100 bases:

>100_bases
TTCCACTTTTCCATCTCTTTATTCTCTTAAGCTGGCTCTAGGCCAGCTTTTATTTTGCGATTTTCCCATCACACCGATTC
CTCTTCGCCGCTTTGACTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MRLYMEMTNAQRLILSNQYFLMSQLDPNNANKYKRLQTIVERGYELHMRELNREFGCLPETECREIIDIMEMYHAMQESN
RMLDDAARKDVDQRRLTFLGFDMATEAQLVNYVRFLVDSEGLYPQFDKGEHHFNSQMPMLAKYRRMLTTWRNCPRQYHLS
GNELRQIMNA

Sequences:

>Translated_170_residues
MRLYMEMTNAQRLILSNQYFLMSQLDPNNANKYKRLQTIVERGYELHMRELNREFGCLPETECREIIDIMEMYHAMQESN
RMLDDAARKDVDQRRLTFLGFDMATEAQLVNYVRFLVDSEGLYPQFDKGEHHFNSQMPMLAKYRRMLTTWRNCPRQYHLS
GNELRQIMNA
>Mature_170_residues
MRLYMEMTNAQRLILSNQYFLMSQLDPNNANKYKRLQTIVERGYELHMRELNREFGCLPETECREIIDIMEMYHAMQESN
RMLDDAARKDVDQRRLTFLGFDMATEAQLVNYVRFLVDSEGLYPQFDKGEHHFNSQMPMLAKYRRMLTTWRNCPRQYHLS
GNELRQIMNA

Specific function: Unknown

COG id: COG3013

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0304 family [H]

Homologues:

Organism=Escherichia coli, GI87082081, Length=166, Percent_Identity=64.4578313253012, Blast_Score=223, Evalue=4e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005587
- InterPro:   IPR023146
- InterPro:   IPR023145
- ProDom:   PD035118 [H]

Pfam domain/function: PF03887 YfbU [H]

EC number: NA

Molecular weight: Translated: 20476; Mature: 20476

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
8.2 %Met     (Translated Protein)
10.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
8.2 %Met     (Mature Protein)
10.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLYMEMTNAQRLILSNQYFLMSQLDPNNANKYKRLQTIVERGYELHMRELNREFGCLPE
CEEEEECCCHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
TECREIIDIMEMYHAMQESNRMLDDAARKDVDQRRLTFLGFDMATEAQLVNYVRFLVDSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
GLYPQFDKGEHHFNSQMPMLAKYRRMLTTWRNCPRQYHLSGNELRQIMNA
CCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHCC
>Mature Secondary Structure
MRLYMEMTNAQRLILSNQYFLMSQLDPNNANKYKRLQTIVERGYELHMRELNREFGCLPE
CEEEEECCCHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
TECREIIDIMEMYHAMQESNRMLDDAARKDVDQRRLTFLGFDMATEAQLVNYVRFLVDSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
GLYPQFDKGEHHFNSQMPMLAKYRRMLTTWRNCPRQYHLSGNELRQIMNA
CCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]