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The map label for this gene is ompT [H]

Identifier: 227081983

GI number: 227081983

Start: 1929118

End: 1930224

Strand: Reverse

Name: ompT [H]

Synonym: VCM66_1777

Alternate gene names: 227081983

Gene position: 1930224-1929118 (Counterclockwise)

Preceding gene: 227081988

Following gene: 227081982

Centisome position: 66.73

GC content: 41.92

Gene sequence:

>1107_bases
TTGGAAAACCACCTTCAAAAAACAGGGAACCGGACAAGGAATTCCCATATTAAGAAAAGGCAGTGGATTAACATGAAAAA
AACTCTATTAGCACTCGCAGTGCTTGCAGCCGCAGGCTCTGTAAACGCAGCTGAAATTCTAAAATCAGATGCTGGCACAG
TTGATTTTTACGGTCAGCTACGTACAGAATTGAAATTCTTAGAAGATAAAGATCCAACAATTGGTTCTGGTTCTTCGCGC
GCTGGTGTTGATGCAAACTACACCGTTAACGATAGCTTAGCGTTACAAGGTAAAGTGGAATTCGCACTAAAAGACAGTGG
CGATATGTATGTTCGTAACCACATTCTTGGTGTAAAAACTAATTTTGGTAAGTTTAGCTTTGGTAAACAATGGACTACAT
CTGACGATGTATACGGTGCTGTCTACTCTTATTTCTTTGGTGGTACAGGTCTTCGTTACGGCACACTGTCTGATGCACTA
CACGATTCTCAAGTCAAGTATGTTTACGAAGCTGACAGCTTCTGGGTTAAAGCTGGTTACGGTTTTCCAGAAGATAATGC
AAAGCAAGAGCTAGCAGAACTGTATGTAGGTGCAACATTTGGTGATTTGGCTGTGCACGCTGGTGGTGGTCAAAACCGTG
ATAAAGCATTCAAAGTTGGTAGTAATACGGTTGGCACAACAACCACAGATATTAAAGCTGACGTAACAAATAGTTACTTT
GAAGTGACAGGTGAGTACACTATTGGTGATGCACTGATTGGTGTTACTTACTACAACGCAGAACTAGATGTAGAAAATAA
CCCACTAGTGATCGATGAAGACGCTATTTCTGTTGCTGGTACATACAAAGTTGCTGACAAGACAAAATTGTATGCTGGCT
ATGAGTATGTAATGCAAGAAGCGAACACTGGCGCAGATGAAGATGGTACTCTTGTTTACCTAGGTGTTGAATACAAATTT
GCAAGCTGGGCTCGTGTATATGCTGAGTATGGCTACGGCGATGGTACAACTCTGGGTTACACCAACAAGGGTTCTGACGC
AGAAGTTAAAGCAACGAAAGTCGACAGCGCTAATAACTTTGGTATCGGTGCTCGTATCTACTGGTAA

Upstream 100 bases:

>100_bases
ATGTTTTTTTCTTTGTTTTTTTTTTATGGTATTTGACATGCAGAATATTCTTTTGCAATCTTAACCACGAATCTAATGGC
GGTGGTGACCAAACAAAGAG

Downstream 100 bases:

>100_bases
GATCTCGAACACGTTTATTGAGAAAGCCCGGCTGCTGCCGGGCTTTTTTATTGTGATGTGCAAGATAAGTGATTATTGTT
GTTGTGTTTATTTTTATACG

Product: ompT protein

Products: NA

Alternate protein names: 37 kDa outer membrane protein [H]

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MENHLQKTGNRTRNSHIKKRQWINMKKTLLALAVLAAAGSVNAAEILKSDAGTVDFYGQLRTELKFLEDKDPTIGSGSSR
AGVDANYTVNDSLALQGKVEFALKDSGDMYVRNHILGVKTNFGKFSFGKQWTTSDDVYGAVYSYFFGGTGLRYGTLSDAL
HDSQVKYVYEADSFWVKAGYGFPEDNAKQELAELYVGATFGDLAVHAGGGQNRDKAFKVGSNTVGTTTTDIKADVTNSYF
EVTGEYTIGDALIGVTYYNAELDVENNPLVIDEDAISVAGTYKVADKTKLYAGYEYVMQEANTGADEDGTLVYLGVEYKF
ASWARVYAEYGYGDGTTLGYTNKGSDAEVKATKVDSANNFGIGARIYW

Sequences:

>Translated_368_residues
MENHLQKTGNRTRNSHIKKRQWINMKKTLLALAVLAAAGSVNAAEILKSDAGTVDFYGQLRTELKFLEDKDPTIGSGSSR
AGVDANYTVNDSLALQGKVEFALKDSGDMYVRNHILGVKTNFGKFSFGKQWTTSDDVYGAVYSYFFGGTGLRYGTLSDAL
HDSQVKYVYEADSFWVKAGYGFPEDNAKQELAELYVGATFGDLAVHAGGGQNRDKAFKVGSNTVGTTTTDIKADVTNSYF
EVTGEYTIGDALIGVTYYNAELDVENNPLVIDEDAISVAGTYKVADKTKLYAGYEYVMQEANTGADEDGTLVYLGVEYKF
ASWARVYAEYGYGDGTTLGYTNKGSDAEVKATKVDSANNFGIGARIYW
>Mature_368_residues
MENHLQKTGNRTRNSHIKKRQWINMKKTLLALAVLAAAGSVNAAEILKSDAGTVDFYGQLRTELKFLEDKDPTIGSGSSR
AGVDANYTVNDSLALQGKVEFALKDSGDMYVRNHILGVKTNFGKFSFGKQWTTSDDVYGAVYSYFFGGTGLRYGTLSDAL
HDSQVKYVYEADSFWVKAGYGFPEDNAKQELAELYVGATFGDLAVHAGGGQNRDKAFKVGSNTVGTTTTDIKADVTNSYF
EVTGEYTIGDALIGVTYYNAELDVENNPLVIDEDAISVAGTYKVADKTKLYAGYEYVMQEANTGADEDGTLVYLGVEYKF
ASWARVYAEYGYGDGTTLGYTNKGSDAEVKATKVDSANNFGIGARIYW

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40125; Mature: 40125

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENHLQKTGNRTRNSHIKKRQWINMKKTLLALAVLAAAGSVNAAEILKSDAGTVDFYGQL
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEHHHH
RTELKFLEDKDPTIGSGSSRAGVDANYTVNDSLALQGKVEFALKDSGDMYVRNHILGVKT
HHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEEEEECCCCEEEEEEEEEEEE
NFGKFSFGKQWTTSDDVYGAVYSYFFGGTGLRYGTLSDALHDSQVKYVYEADSFWVKAGY
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCHHHHHCCCCEEEEEECCCEEEEECC
GFPEDNAKQELAELYVGATFGDLAVHAGGGQNRDKAFKVGSNTVGTTTTDIKADVTNSYF
CCCCCHHHHHHHHHHHCCEEHHEEEECCCCCCCCCEEEECCCCCCCEECEEEECCCCCEE
EVTGEYTIGDALIGVTYYNAELDVENNPLVIDEDAISVAGTYKVADKTKLYAGYEYVMQE
EEECCEEECCEEEEEEEEEEEEECCCCCEEEECCCEEEEEEEEECCCEEEEHHHHHHHHH
ANTGADEDGTLVYLGVEYKFASWARVYAEYGYGDGTTLGYTNKGSDAEVKATKVDSANNF
CCCCCCCCCEEEEEEEEECHHHHHHHHHHCCCCCCCEECCCCCCCCCEEEEEEECCCCCC
GIGARIYW
CCEEEEEC
>Mature Secondary Structure
MENHLQKTGNRTRNSHIKKRQWINMKKTLLALAVLAAAGSVNAAEILKSDAGTVDFYGQL
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEHHHH
RTELKFLEDKDPTIGSGSSRAGVDANYTVNDSLALQGKVEFALKDSGDMYVRNHILGVKT
HHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEEEEECCCCEEEEEEEEEEEE
NFGKFSFGKQWTTSDDVYGAVYSYFFGGTGLRYGTLSDALHDSQVKYVYEADSFWVKAGY
CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCHHHHHCCCCEEEEEECCCEEEEECC
GFPEDNAKQELAELYVGATFGDLAVHAGGGQNRDKAFKVGSNTVGTTTTDIKADVTNSYF
CCCCCHHHHHHHHHHHCCEEHHEEEECCCCCCCCCEEEECCCCCCCEECEEEECCCCCEE
EVTGEYTIGDALIGVTYYNAELDVENNPLVIDEDAISVAGTYKVADKTKLYAGYEYVMQE
EEECCEEECCEEEEEEEEEEEEECCCCCEEEECCCEEEEEEEEECCCEEEEHHHHHHHHH
ANTGADEDGTLVYLGVEYKFASWARVYAEYGYGDGTTLGYTNKGSDAEVKATKVDSANNF
CCCCCCCCCEEEEEEEEECHHHHHHHHHHCCCCCCCEECCCCCCCCCEEEEEEECCCCCC
GIGARIYW
CCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8396546; 2479840 [H]