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The map label for this gene is ybgF [H]

Identifier: 227081963

GI number: 227081963

Start: 1912180

End: 1912944

Strand: Reverse

Name: ybgF [H]

Synonym: VCM66_1757

Alternate gene names: 227081963

Gene position: 1912944-1912180 (Counterclockwise)

Preceding gene: 227081964

Following gene: 227081962

Centisome position: 66.13

GC content: 46.8

Gene sequence:

>765_bases
ATGTTCAGTAACTTAAAGCACGTTGTCATGCTGATGTTACTGGCAAGTGCAGCGAGCTATGCGCTCGCTGCACCCGCTCC
AGTATCTGACTTAGGTAGCAACGTATCCGGTGGTTCGCGGAGTTCAGAAATTGAACGTCTCGAACGTCTCCTCGAAAGCC
GTAATCTTGTGCAGTTGCAAATGCAAAAGCAACTCGATGATATGGCACTTGAAGTCAATGAATTACGGGGCCAGATTGAA
AAAAACAACTATGACATGCAGCAAATGTTGCAGCGTCAAAGGGAGTTGTTTGTAGAACTTGACCGTGTGCGTGGCGAGAT
GAAGTCACCTTCCTCCGGAGCCGGCCAACTACCAACAAGCAGCAATGATGAGGCTGCACAAGGCACCTTCAGTAGCGACG
CTAATGAACAGGCTGCTTATCAGAATGCTGTTGATCTGATCCTTAAAAAGCGTGACTACGCAGGTGCGATTGCCGCTTTC
CAGAAGTTTCAGACTGACTACCCTAATTCGACCTTCTCTGCTAATGCTCACTACTGGCTAGGCCAGCTCTATTTTGCCAA
GAAAGAAGACAAAGAAGCCGCGAAAAGTTTTGCAGCTGTTGTCTCGGATAAAGGCTCTAACAAACGGGCTGATGCATTAG
TTAAGTTGGGCGATATTGCGAAACGCAATAATAACGCCGAGCAGGCACGTAAATTTTACCAGCAAGCGGTGGATGAATAT
CCCGATAGTGCTTCTGCTAAAATTGCCAAAGAAAACCTTAAATAA

Upstream 100 bases:

>100_bases
TAGCTACGGTGAAGAGAAGCCTCTAGTTCTAGGTCAATCAGAAGAAGCGTACGCGAAAAACCGTCGTGCAGTTCTGGTTT
ACTAATTGAGGTGATGCCTC

Downstream 100 bases:

>100_bases
ATACAAGAGCTGCGAATGCAGCTCTTGTTCGTTTCAGCTTTTCACTCTGTTATGGACAGGGTCATTCATCGCTACACATT
ATTTCTCCCTCCTTGTTTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MFSNLKHVVMLMLLASAASYALAAPAPVSDLGSNVSGGSRSSEIERLERLLESRNLVQLQMQKQLDDMALEVNELRGQIE
KNNYDMQQMLQRQRELFVELDRVRGEMKSPSSGAGQLPTSSNDEAAQGTFSSDANEQAAYQNAVDLILKKRDYAGAIAAF
QKFQTDYPNSTFSANAHYWLGQLYFAKKEDKEAAKSFAAVVSDKGSNKRADALVKLGDIAKRNNNAEQARKFYQQAVDEY
PDSASAKIAKENLK

Sequences:

>Translated_254_residues
MFSNLKHVVMLMLLASAASYALAAPAPVSDLGSNVSGGSRSSEIERLERLLESRNLVQLQMQKQLDDMALEVNELRGQIE
KNNYDMQQMLQRQRELFVELDRVRGEMKSPSSGAGQLPTSSNDEAAQGTFSSDANEQAAYQNAVDLILKKRDYAGAIAAF
QKFQTDYPNSTFSANAHYWLGQLYFAKKEDKEAAKSFAAVVSDKGSNKRADALVKLGDIAKRNNNAEQARKFYQQAVDEY
PDSASAKIAKENLK
>Mature_254_residues
MFSNLKHVVMLMLLASAASYALAAPAPVSDLGSNVSGGSRSSEIERLERLLESRNLVQLQMQKQLDDMALEVNELRGQIE
KNNYDMQQMLQRQRELFVELDRVRGEMKSPSSGAGQLPTSSNDEAAQGTFSSDANEQAAYQNAVDLILKKRDYAGAIAAF
QKFQTDYPNSTFSANAHYWLGQLYFAKKEDKEAAKSFAAVVSDKGSNKRADALVKLGDIAKRNNNAEQARKFYQQAVDEY
PDSASAKIAKENLK

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=264, Percent_Identity=34.0909090909091, Blast_Score=125, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28130; Mature: 28130

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHCCC
>Mature Secondary Structure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CCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]