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The map label for this gene is radC [C]

Identifier: 227081931

GI number: 227081931

Start: 1883254

End: 1883730

Strand: Direct

Name: radC [C]

Synonym: VCM66_1724

Alternate gene names: 227081931

Gene position: 1883254-1883730 (Clockwise)

Preceding gene: 227081929

Following gene: 227081932

Centisome position: 65.11

GC content: 48.85

Gene sequence:

>477_bases
ATGACTCATTTCCCTCGCCACCGCTATCTACTCTCGCAACGAGCTTATGAGCATCGAGTACTGGAAGAAGCAGCAGAGAT
CCTTGAACAGCGTTATGTGCGCGGTGAAACCTTTGCACGTACGGAAAACACCACGGAATACTTACGCTGTAAACTTGCTG
GATATGAGCACGAAATCTTTGCCGTACTGTTTTTGGATAACCAGCATCGGCTAATTGAATTTAAGGAGCTATTTCGCGGT
ACGGTCGATGCCGCCAGTGTCTACCCAAGAGAGGTATTAAAGGAGGCACTAAACGTTAACGCAGCAGCGGTGATCTTTGC
CCATAACCACCCCTCTGGCGATCCTGAGCCTTCACAAGCCGATAGGCGTATTACTCAGCGCTTAAAAGACGCCTTATCAC
TGGTAGATATTCGTGTGCTAGACCATGTGGTCGTTGGCAAAAGCAGTGTGTCATTTGCAGAAAGGGGCTGGCTATGA

Upstream 100 bases:

>100_bases
TCTGTAAAAAATAGTTAAATCAGTCCCTTACCTATATTCAAAGCCAATTTAGATATATGTCATCACTGTGAACCTTCCCA
CTATTGTTAAGGAGCAGGCT

Downstream 100 bases:

>100_bases
TTGTGGAAAGCTATCAAACGATCCAGTTAGCTGACAGCTTTTGTCATGCGTTGAGCGCGATACTTCGCCGTTTTGACATC
CCACAAGAGGCAGAGCGAAT

Product: putative DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MTHFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIFAVLFLDNQHRLIEFKELFRG
TVDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL

Sequences:

>Translated_158_residues
MTHFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIFAVLFLDNQHRLIEFKELFRG
TVDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL
>Mature_157_residues
THFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIFAVLFLDNQHRLIEFKELFRGT
VDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=118, Percent_Identity=53.3898305084746, Blast_Score=142, Evalue=9e-36,
Organism=Escherichia coli, GI1788997, Length=144, Percent_Identity=50.6944444444444, Blast_Score=138, Evalue=1e-34,
Organism=Escherichia coli, GI2367100, Length=125, Percent_Identity=55.2, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1788312, Length=125, Percent_Identity=55.2, Blast_Score=131, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1786_VIBCH (Q9KR57)

Other databases:

- EMBL:   AE003852
- PIR:   F82155
- RefSeq:   NP_231421.1
- ProteinModelPortal:   Q9KR57
- SMR:   Q9KR57
- GeneID:   2613666
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC1786
- TIGR:   VC_1786
- HOGENOM:   HBG751042
- OMA:   NQHCLLE
- ProtClustDB:   CLSK794377
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466

EC number: NA

Molecular weight: Translated: 18275; Mature: 18144

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHCCCCCEEE
AVLFLDNQHRLIEFKELFRGTVDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQA
EEEEECCCCHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHH
DRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCC
>Mature Secondary Structure 
THFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHCCCCCEEE
AVLFLDNQHRLIEFKELFRGTVDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQA
EEEEECCCCHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHH
DRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301