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The map label for this gene is ymbA [C]

Identifier: 227081902

GI number: 227081902

Start: 1837676

End: 1838254

Strand: Direct

Name: ymbA [C]

Synonym: VCM66_1694

Alternate gene names: 227081902

Gene position: 1837676-1838254 (Clockwise)

Preceding gene: 227081901

Following gene: 227081903

Centisome position: 63.53

GC content: 48.7

Gene sequence:

>579_bases
ATGAAACCCTGGTTATTGATGATGTTAACCACACTGTTGGTCGGCTGCGGAGGAACGCCACAGCCCAAAGTCAGTTTTTA
TTTACTGCCAAACAACCCAGAACTTAGCGAGCATATCCAGCCCAAAACATTGCCTTTGCTGGTGGTTCAACCCGTGGAAT
TGGCGGCTTATCTAGATACGCAAGGGATTGTTTATCGTCAGTCGGAAACGCAAGTGATCCAAGCCAGACAAAACCAGTGG
GCACAGCGGCTTAGCCCACAACTGACACAACGTATCACCAATGATCTGCGCCGTAAGCAATCTCGCTACTGGCCTGCACC
TTTGAATGCTTCATCCATCCAGCAAGAGCACTGGAAACTACAGGTAAGATTGCAGCGATTTAATGGTGTCTACACGGGCA
ATGCCGAAGTGGCTGGCAATTGGGAACTGCTCAACCCAAAAGGAGAAAGCATGTTAAACCAAGAGTTTAGTTTTCAGGTG
CCGCTCAAAGATACGGGTTACCCCGCTCTGGTTGAAGCACTCTCTGCGGGTGTAGATCAACTTTCAACTCAGATCGAAAC
CCAATTGGTAACTCGCTGA

Upstream 100 bases:

>100_bases
AATTTAAACCTGTGCTGCGCACCATTAATGAAAAACCTAATGCCTTGATTTTTGGTGAAAGTAATACAGCAGATCCGATT
CCCGCGAAAGGAAAGCAAGA

Downstream 100 bases:

>100_bases
GCAGACACTCAGATTATCGATAGAATAAAAAGCCCAACACAAATGTACACCCGAAAGTTTACTTTTTATCATTACTCAAG
GTATGATGCGCGACAAGTTA

Product: putative lipoprotein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKPWLLMMLTTLLVGCGGTPQPKVSFYLLPNNPELSEHIQPKTLPLLVVQPVELAAYLDTQGIVYRQSETQVIQARQNQW
AQRLSPQLTQRITNDLRRKQSRYWPAPLNASSIQQEHWKLQVRLQRFNGVYTGNAEVAGNWELLNPKGESMLNQEFSFQV
PLKDTGYPALVEALSAGVDQLSTQIETQLVTR

Sequences:

>Translated_192_residues
MKPWLLMMLTTLLVGCGGTPQPKVSFYLLPNNPELSEHIQPKTLPLLVVQPVELAAYLDTQGIVYRQSETQVIQARQNQW
AQRLSPQLTQRITNDLRRKQSRYWPAPLNASSIQQEHWKLQVRLQRFNGVYTGNAEVAGNWELLNPKGESMLNQEFSFQV
PLKDTGYPALVEALSAGVDQLSTQIETQLVTR
>Mature_192_residues
MKPWLLMMLTTLLVGCGGTPQPKVSFYLLPNNPELSEHIQPKTLPLLVVQPVELAAYLDTQGIVYRQSETQVIQARQNQW
AQRLSPQLTQRITNDLRRKQSRYWPAPLNASSIQQEHWKLQVRLQRFNGVYTGNAEVAGNWELLNPKGESMLNQEFSFQV
PLKDTGYPALVEALSAGVDQLSTQIETQLVTR

Specific function: Unknown

COG id: COG3009

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693109, Length=189, Percent_Identity=28.042328042328, Blast_Score=64, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21825; Mature: 21825

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPWLLMMLTTLLVGCGGTPQPKVSFYLLPNNPELSEHIQPKTLPLLVVQPVELAAYLDT
CCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCEEEECHHHHHHHCCC
QGIVYRQSETQVIQARQNQWAQRLSPQLTQRITNDLRRKQSRYWPAPLNASSIQQEHWKL
CCEEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
QVRLQRFNGVYTGNAEVAGNWELLNPKGESMLNQEFSFQVPLKDTGYPALVEALSAGVDQ
HEEEEHHCCEEECCCEEECCEEEECCCCHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH
LSTQIETQLVTR
HHHHHHHHHCCC
>Mature Secondary Structure
MKPWLLMMLTTLLVGCGGTPQPKVSFYLLPNNPELSEHIQPKTLPLLVVQPVELAAYLDT
CCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCEEEECHHHHHHHCCC
QGIVYRQSETQVIQARQNQWAQRLSPQLTQRITNDLRRKQSRYWPAPLNASSIQQEHWKL
CCEEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
QVRLQRFNGVYTGNAEVAGNWELLNPKGESMLNQEFSFQVPLKDTGYPALVEALSAGVDQ
HEEEEHHCCEEECCCEEECCEEEECCCCHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH
LSTQIETQLVTR
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA