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The map label for this gene is ynjB [H]

Identifier: 227081815

GI number: 227081815

Start: 1742587

End: 1743735

Strand: Direct

Name: ynjB [H]

Synonym: VCM66_1604

Alternate gene names: 227081815

Gene position: 1742587-1743735 (Clockwise)

Preceding gene: 227081814

Following gene: 227081816

Centisome position: 60.24

GC content: 49.17

Gene sequence:

>1149_bases
ATGAAAAAAATGCTGACTTTTCTCACGACCTGCGCCCTCTCATTTGGCGTTTCTGCGCAATCATGGGAAGAGACTACCGA
GAAAGCCCGCGGACAAACGGTTTATTTCCATGCTTGGGGTGGCAGCCAAGAGATTAATAGCTACTTGCGCTGGTCTGCTG
ACCTACTCAAATCCCGCTATGGCGTCACCTTGCAGCATGTGAAAGTAACGGATATCGCCGAAACGACTACCCGTTTGATC
GCAGAGAAAGCGGCAGGAAAAAATGAGCAAGGCAGTGTCGATTTGGTTTGGATTAACGGTGAAAACTTCAAATCAATGAA
AAACAACCAGTTACTCTACGGGCCATTTGTCGAAGATTTACCTAACTGGCCGAAAGTCGACAAAAGCTTACCCGTTGACA
GCGATTTTTCCGAGCCAACTGAAGGCTTAGAAGCGCCTTGGGGCGTCGGACAATTGGTGTTTATTCATGATAAGCAGCAA
GTGAACAATCCTCCGGCTTCATTTGCCGAGCTGCTCAGCTATGCGCAGGCTTTTCCAAACCGCATTAGCTACCCACAGCC
CCCTGAATTTCATGGTACCAGCTTCTTGAAAGCAGCCCTGATCGAACTGACTCACTATGCGCCAGAACTCAATCAAGCCG
TAGAGCCTGCCACATTTGAGCAGCTCACCCAACCACTATGGCAATACTTAGATGAATTGCATGCTGTGGCTTGGCGCAAA
GGCAAACAGTTTCCCGCTGGCTCTGCCCAGATGATGCAACTGCTGGATGATGGTCAACTAGACCTCGCGATCACCTTTAA
CCCGAATGCGGTATTTTCAGCGCAAGCTACTGGCAAGCTCGCACCGACAGCGCAAAGCTATGCGATGAAAAAGGGCGCTT
TAACCAATATCCACTTCTTAGCAATTCCTTGGAACGCTAACGCAAAAGAAGGGGCGCTGGTGGCGATTAATTTCCTCCTG
AGTGACGAAGCACAATCTCGTAAAGGGGATTTGTCTATTTGGGGCGACCCTTCCATATTGAAACCTCAGTTTCTGACAGG
CAGTGCCAAAAATACCATCCTATTCCCTGCGATTGCTGAGCCGCACCCAAGTTGGCAAAGCGCGCTCGAAGCAGAATGGC
AAAAGCGCTACGGTAATAGCTTAAAGTAA

Upstream 100 bases:

>100_bases
AAGCAAAACAAGCATTTTGAATTTTTTCCTTCATAATGAAAGACAAGCATCTTTCACCCGGTCTAGAAATACTGTAAAGC
CGAAATTTTAAGGACAATTC

Downstream 100 bases:

>100_bases
CGGTTGTCAGACCATGCTTAGAACTGCCTATTGGGGTTTCATTTTGCTTTGTGTCGCGCCGATCCTACCTGGGTTGGCGG
GAGTCTTGATCTCAGCCTCA

Product: putative ABC transporter solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MKKMLTFLTTCALSFGVSAQSWEETTEKARGQTVYFHAWGGSQEINSYLRWSADLLKSRYGVTLQHVKVTDIAETTTRLI
AEKAAGKNEQGSVDLVWINGENFKSMKNNQLLYGPFVEDLPNWPKVDKSLPVDSDFSEPTEGLEAPWGVGQLVFIHDKQQ
VNNPPASFAELLSYAQAFPNRISYPQPPEFHGTSFLKAALIELTHYAPELNQAVEPATFEQLTQPLWQYLDELHAVAWRK
GKQFPAGSAQMMQLLDDGQLDLAITFNPNAVFSAQATGKLAPTAQSYAMKKGALTNIHFLAIPWNANAKEGALVAINFLL
SDEAQSRKGDLSIWGDPSILKPQFLTGSAKNTILFPAIAEPHPSWQSALEAEWQKRYGNSLK

Sequences:

>Translated_382_residues
MKKMLTFLTTCALSFGVSAQSWEETTEKARGQTVYFHAWGGSQEINSYLRWSADLLKSRYGVTLQHVKVTDIAETTTRLI
AEKAAGKNEQGSVDLVWINGENFKSMKNNQLLYGPFVEDLPNWPKVDKSLPVDSDFSEPTEGLEAPWGVGQLVFIHDKQQ
VNNPPASFAELLSYAQAFPNRISYPQPPEFHGTSFLKAALIELTHYAPELNQAVEPATFEQLTQPLWQYLDELHAVAWRK
GKQFPAGSAQMMQLLDDGQLDLAITFNPNAVFSAQATGKLAPTAQSYAMKKGALTNIHFLAIPWNANAKEGALVAINFLL
SDEAQSRKGDLSIWGDPSILKPQFLTGSAKNTILFPAIAEPHPSWQSALEAEWQKRYGNSLK
>Mature_382_residues
MKKMLTFLTTCALSFGVSAQSWEETTEKARGQTVYFHAWGGSQEINSYLRWSADLLKSRYGVTLQHVKVTDIAETTTRLI
AEKAAGKNEQGSVDLVWINGENFKSMKNNQLLYGPFVEDLPNWPKVDKSLPVDSDFSEPTEGLEAPWGVGQLVFIHDKQQ
VNNPPASFAELLSYAQAFPNRISYPQPPEFHGTSFLKAALIELTHYAPELNQAVEPATFEQLTQPLWQYLDELHAVAWRK
GKQFPAGSAQMMQLLDDGQLDLAITFNPNAVFSAQATGKLAPTAQSYAMKKGALTNIHFLAIPWNANAKEGALVAINFLL
SDEAQSRKGDLSIWGDPSILKPQFLTGSAKNTILFPAIAEPHPSWQSALEAEWQKRYGNSLK

Specific function: Unknown

COG id: COG4134

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081966, Length=368, Percent_Identity=45.9239130434783, Blast_Score=322, Evalue=2e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42416; Mature: 42416

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMLTFLTTCALSFGVSAQSWEETTEKARGQTVYFHAWGGSQEINSYLRWSADLLKSRY
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC
GVTLQHVKVTDIAETTTRLIAEKAAGKNEQGSVDLVWINGENFKSMKNNQLLYGPFVEDL
CCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEECCHHHHC
PNWPKVDKSLPVDSDFSEPTEGLEAPWGVGQLVFIHDKQQVNNPPASFAELLSYAQAFPN
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECHHHCCCCCHHHHHHHHHHHHHHC
RISYPQPPEFHGTSFLKAALIELTHYAPELNQAVEPATFEQLTQPLWQYLDELHAVAWRK
CCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
GKQFPAGSAQMMQLLDDGQLDLAITFNPNAVFSAQATGKLAPTAQSYAMKKGALTNIHFL
CCCCCCCHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEEE
AIPWNANAKEGALVAINFLLSDEAQSRKGDLSIWGDPSILKPQFLTGSAKNTILFPAIAE
EEECCCCCCCCEEEEEEEEECCCCCCCCCCEEECCCCCCCCCHHCCCCCCCEEEEEECCC
PHPSWQSALEAEWQKRYGNSLK
CCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKMLTFLTTCALSFGVSAQSWEETTEKARGQTVYFHAWGGSQEINSYLRWSADLLKSRY
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC
GVTLQHVKVTDIAETTTRLIAEKAAGKNEQGSVDLVWINGENFKSMKNNQLLYGPFVEDL
CCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEECCHHHHC
PNWPKVDKSLPVDSDFSEPTEGLEAPWGVGQLVFIHDKQQVNNPPASFAELLSYAQAFPN
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEECHHHCCCCCHHHHHHHHHHHHHHC
RISYPQPPEFHGTSFLKAALIELTHYAPELNQAVEPATFEQLTQPLWQYLDELHAVAWRK
CCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
GKQFPAGSAQMMQLLDDGQLDLAITFNPNAVFSAQATGKLAPTAQSYAMKKGALTNIHFL
CCCCCCCHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEEE
AIPWNANAKEGALVAINFLLSDEAQSRKGDLSIWGDPSILKPQFLTGSAKNTILFPAIAE
EEECCCCCCCCEEEEEEEEECCCCCCCCCCEEECCCCCCCCCHHCCCCCCCEEEEEECCC
PHPSWQSALEAEWQKRYGNSLK
CCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10806384 [H]