Click here to switch to the map view.

The map label for this gene is 227081781

Identifier: 227081781

GI number: 227081781

Start: 1699691

End: 1702201

Strand: Reverse

Name: 227081781

Synonym: VCM66_1568

Alternate gene names: NA

Gene position: 1702201-1699691 (Counterclockwise)

Preceding gene: 227081782

Following gene: 227081780

Centisome position: 58.85

GC content: 48.43

Gene sequence:

>2511_bases
GTGAAAAAGTTGCGCAGCACATGGATGGCTGTATTCGTCTGCAAGGAGGACAGCTGCATGTTATGGCCCGTAGTTAAGGC
GCTATTGGGTCATTATCGTCGCTATCCATTACAGATTTGTCTGGTCTGGCTTGGCTTGACTCTCGGTGTCTCTCTATTGG
TGGGCGTTACAGCCATTAACCATCATGCCAGACAAAGTTATGAGCATGGTGAGAAGCTATTTTCTAATCCTTTACCCTAT
CGTATTCGCTCCAAGCATATTGCTAATAAAATTCCGCAAGGCTTATATATTCAGTTACGTCGTGACGGTTTTCAGCAGTG
TGTTCCTTTCGATGATTACCGTTTTAGTACCACATCAGGTTTAGATCTGATTTTACAAGGGATTGATCCCGTCGCTTTAC
TCTCTATCGACAACGGCAAACCCTTAGCTCAACAAAGTGGTTTGCAACTGATGAACCCGCCATATCCGGTCATGGTGAGT
CAAGAGTTAGCCAAACTGCAAGATTGGCAAGAAGGGGACTACATCGCGCTGACGGATGGTTCTCAGCTTGGCCCGATTGT
GATTGATAGACATAACCAAGTCACGGGAATGCGAGTAGTGGCCGACCTATCTTTGGTCCGTATGCTCAAAAAAGGCTCTG
GATTGACGGTGATCGCGTGTGCGGATATGCCACCGGCCAAGCTCGATAAACTGAAAAAAAGCTTGCCCAATGGCTTAACG
CTCACCCGAAGTACACGTTCAGAGTTGGAGTCTTTAACGCAAGCTTTCCATCTCAACTTAACCGCGATGGGCATGTTGGC
CTTTTTAGTCGGTATCTTTATTTTCTATCAAGCGATGTCACTGTCTATGGTGCAGCGTCAGCCTTTGGTGGGCACGCTAA
GACAAATTGGTGTTAATGGTTGGCAACTGGCCAAAGCATTGCTGATTGAACTGTTGGTATTGGTATTGGTGAGTTGGGTA
TGCGGTAACGTCTTGGGTTTACTGCTTGCCAATCAATTAATTCCATCTGTCGCGAGCAGTTTGGGTTATCTGTATAACGC
CAATGTGGACTTAGCGATTGGTTGGGATTGGTCATGGAGCAGTTACAGTCTTTTGATGGCACTATTGGCGGCCTTTGCTT
CTTGTACATGGCCTTTGGTGCGTTTGTTGCGTTCTCAACCCATTCGCTTATCGGCACGCCTGTCATTGGTTCGCTTTGCG
GGGAAAGAGTTTAAGCTACAAGCGCTATTGGCCTGTGCTTTGTGTGTGGCGGCGGTCGCGATTTATCAAGCCCCGAAAAG
TCAGCAATCAGGGTTTGCGATTATTGGCTTAATGCTGCTGAGCGTTGCGCTGTTTACTCCCTACATTATCTGGACGTTAT
TCACCAGCTTTTCTTACACGCTGCGCTGGGTCAAAGTGCGTTGGTTTTTTGCCGATGCCGCCGCGAGTATGAGTTATCGT
GGTGTCGCCACGATGGCATTTATGGTCGCTTTAGCGGCCAATATTGGTGTTGAAACCATGGTCGGCAGTTTCCGAGATAC
CACAGATCGCTGGCTGAGCCAGCGCCTTGCGGCCGATATCTACCTTTATCCGAGTAACAGTGTCGCTTCTCGTATGAGCC
AATGGCTTGGCCAGCAGCCCGAAGTTGACGCGGTTTGGTGGCGTTGGGAAAAAGATTTCGCATCGCAACAAGGGCCAGTA
CAAATCGTCAGTACGGGCGCTTCGGATGGTGAGCTAGACTCACTCACAGTCAAACTGGGCGTGCCTAATTATTGGTACCA
TTTGCATCATGCGCGGGGGGTAATGATCAGTGAATCGATGGCGTTGAAGCTCGGGATTCGTCCCGGTGACCTGATCGATT
TACCGGAACCGATGGGCTCGGGGTGGGCGGTTTTTGGGGTCTATTACGATTACGGCAATCCTTATCATCAAGTGATGATG
TCCCATCAAAACTGGATGAAAGCCTTTGCCGGCACTGGCAACGTGGCCTTGGCGGTTGTGCTCAAAGAAGGGCTCACCGG
AGAAAGCGTCAAAAAACGCCTTGATACCATTTTCAGGCTGGATGCGGATCGTATCTTTGATAACACCAATATTCATAGCC
ATGCGATGCGGGTTTTTGATCGCACGTTTTCGATTGCGGGAACGCTGGGCAATATCACCTTATTTATCGCCGTCTGTGGC
ATTTTCTTCTCAACTCTCGCGGGAGAAACATCGCGTTTACGCCATATCTCTTTGTTGCGTTGCCTTGGTGTGTCAGGCAA
AGAGCTGGTACTGATCGGCGGCATGCAGTTATTTGTTTTCGGCGCTATCTCTTTATTGATTGCACTGCCTTTGGGATTAA
CTTTGGCCAAATTAGTGATTGATGTGGTGATCAAACATTCGTTTGGATGGACTATGCAGTTGCAAATGGTGCCGGGAGAG
TATGTGTACACAGTGGTGTGGTCTATGATGGCTTTAATTTTGGCGGGCGCTTTGCCAATTATTCGTTTGGCAAGAAAATC
ACCGATGAAATCACTGCGAGAGGCTTTGTAA

Upstream 100 bases:

>100_bases
CCGACCGGCAGCTTAGATGAACGCAATGCCGAGGCGGTAATGCGCTTGCTCACGACTCTGACTCGTCAGCTCAATTGTGC
CTTGCTTTTGGTGACGCACA

Downstream 100 bases:

>100_bases
ATGCGCCGCTTTCGTTTGCGCTTGAAACCTTGGGTATGGCTCAGCCTTGGCGCTCTGTTTTTTATGGTGGGCTTTATTGG
CTATGAGCAGGACGAGTATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 836; Mature: 836

Protein sequence:

>836_residues
MKKLRSTWMAVFVCKEDSCMLWPVVKALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSNPLPY
RIRSKHIANKIPQGLYIQLRRDGFQQCVPFDDYRFSTTSGLDLILQGIDPVALLSIDNGKPLAQQSGLQLMNPPYPVMVS
QELAKLQDWQEGDYIALTDGSQLGPIVIDRHNQVTGMRVVADLSLVRMLKKGSGLTVIACADMPPAKLDKLKKSLPNGLT
LTRSTRSELESLTQAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNGWQLAKALLIELLVLVLVSWV
CGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWDWSWSSYSLLMALLAAFASCTWPLVRLLRSQPIRLSARLSLVRFA
GKEFKLQALLACALCVAAVAIYQAPKSQQSGFAIIGLMLLSVALFTPYIIWTLFTSFSYTLRWVKVRWFFADAAASMSYR
GVATMAFMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSVASRMSQWLGQQPEVDAVWWRWEKDFASQQGPV
QIVSTGASDGELDSLTVKLGVPNYWYHLHHARGVMISESMALKLGIRPGDLIDLPEPMGSGWAVFGVYYDYGNPYHQVMM
SHQNWMKAFAGTGNVALAVVLKEGLTGESVKKRLDTIFRLDADRIFDNTNIHSHAMRVFDRTFSIAGTLGNITLFIAVCG
IFFSTLAGETSRLRHISLLRCLGVSGKELVLIGGMQLFVFGAISLLIALPLGLTLAKLVIDVVIKHSFGWTMQLQMVPGE
YVYTVVWSMMALILAGALPIIRLARKSPMKSLREAL

Sequences:

>Translated_836_residues
MKKLRSTWMAVFVCKEDSCMLWPVVKALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSNPLPY
RIRSKHIANKIPQGLYIQLRRDGFQQCVPFDDYRFSTTSGLDLILQGIDPVALLSIDNGKPLAQQSGLQLMNPPYPVMVS
QELAKLQDWQEGDYIALTDGSQLGPIVIDRHNQVTGMRVVADLSLVRMLKKGSGLTVIACADMPPAKLDKLKKSLPNGLT
LTRSTRSELESLTQAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNGWQLAKALLIELLVLVLVSWV
CGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWDWSWSSYSLLMALLAAFASCTWPLVRLLRSQPIRLSARLSLVRFA
GKEFKLQALLACALCVAAVAIYQAPKSQQSGFAIIGLMLLSVALFTPYIIWTLFTSFSYTLRWVKVRWFFADAAASMSYR
GVATMAFMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSVASRMSQWLGQQPEVDAVWWRWEKDFASQQGPV
QIVSTGASDGELDSLTVKLGVPNYWYHLHHARGVMISESMALKLGIRPGDLIDLPEPMGSGWAVFGVYYDYGNPYHQVMM
SHQNWMKAFAGTGNVALAVVLKEGLTGESVKKRLDTIFRLDADRIFDNTNIHSHAMRVFDRTFSIAGTLGNITLFIAVCG
IFFSTLAGETSRLRHISLLRCLGVSGKELVLIGGMQLFVFGAISLLIALPLGLTLAKLVIDVVIKHSFGWTMQLQMVPGE
YVYTVVWSMMALILAGALPIIRLARKSPMKSLREAL
>Mature_836_residues
MKKLRSTWMAVFVCKEDSCMLWPVVKALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAINHHARQSYEHGEKLFSNPLPY
RIRSKHIANKIPQGLYIQLRRDGFQQCVPFDDYRFSTTSGLDLILQGIDPVALLSIDNGKPLAQQSGLQLMNPPYPVMVS
QELAKLQDWQEGDYIALTDGSQLGPIVIDRHNQVTGMRVVADLSLVRMLKKGSGLTVIACADMPPAKLDKLKKSLPNGLT
LTRSTRSELESLTQAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNGWQLAKALLIELLVLVLVSWV
CGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWDWSWSSYSLLMALLAAFASCTWPLVRLLRSQPIRLSARLSLVRFA
GKEFKLQALLACALCVAAVAIYQAPKSQQSGFAIIGLMLLSVALFTPYIIWTLFTSFSYTLRWVKVRWFFADAAASMSYR
GVATMAFMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSVASRMSQWLGQQPEVDAVWWRWEKDFASQQGPV
QIVSTGASDGELDSLTVKLGVPNYWYHLHHARGVMISESMALKLGIRPGDLIDLPEPMGSGWAVFGVYYDYGNPYHQVMM
SHQNWMKAFAGTGNVALAVVLKEGLTGESVKKRLDTIFRLDADRIFDNTNIHSHAMRVFDRTFSIAGTLGNITLFIAVCG
IFFSTLAGETSRLRHISLLRCLGVSGKELVLIGGMQLFVFGAISLLIALPLGLTLAKLVIDVVIKHSFGWTMQLQMVPGE
YVYTVVWSMMALILAGALPIIRLARKSPMKSLREAL

Specific function: Unknown

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 92704; Mature: 92704

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLRSTWMAVFVCKEDSCMLWPVVKALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAIN
CCCHHHCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HHARQSYEHGEKLFSNPLPYRIRSKHIANKIPQGLYIQLRRDGFQQCVPFDDYRFSTTSG
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCCCCC
LDLILQGIDPVALLSIDNGKPLAQQSGLQLMNPPYPVMVSQELAKLQDWQEGDYIALTDG
HHHHHHCCCCEEEEEECCCCCCHHHCCCEECCCCCCEEEHHHHHHHHCCCCCCEEEEECC
SQLGPIVIDRHNQVTGMRVVADLSLVRMLKKGSGLTVIACADMPPAKLDKLKKSLPNGLT
CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCE
LTRSTRSELESLTQAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNG
EECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCH
WQLAKALLIELLVLVLVSWVCGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWDWSWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEEECCCCCC
SYSLLMALLAAFASCTWPLVRLLRSQPIRLSARLSLVRFAGKEFKLQALLACALCVAAVA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IYQAPKSQQSGFAIIGLMLLSVALFTPYIIWTLFTSFSYTLRWVKVRWFFADAAASMSYR
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEHHHHHCCCCC
GVATMAFMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSVASRMSQWLGQQP
HHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCC
EVDAVWWRWEKDFASQQGPVQIVSTGASDGELDSLTVKLGVPNYWYHLHHARGVMISESM
CCCCEEEEECHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHCCEEEECCE
ALKLGIRPGDLIDLPEPMGSGWAVFGVYYDYGNPYHQVMMSHQNWMKAFAGTGNVALAVV
EEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE
LKEGLTGESVKKRLDTIFRLDADRIFDNTNIHSHAMRVFDRTFSIAGTLGNITLFIAVCG
ECCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFFSTLAGETSRLRHISLLRCLGVSGKELVLIGGMQLFVFGAISLLIALPLGLTLAKLVI
HHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
DVVIKHSFGWTMQLQMVPGEYVYTVVWSMMALILAGALPIIRLARKSPMKSLREAL
HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure
MKKLRSTWMAVFVCKEDSCMLWPVVKALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAIN
CCCHHHCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HHARQSYEHGEKLFSNPLPYRIRSKHIANKIPQGLYIQLRRDGFQQCVPFDDYRFSTTSG
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCCCCC
LDLILQGIDPVALLSIDNGKPLAQQSGLQLMNPPYPVMVSQELAKLQDWQEGDYIALTDG
HHHHHHCCCCEEEEEECCCCCCHHHCCCEECCCCCCEEEHHHHHHHHCCCCCCEEEEECC
SQLGPIVIDRHNQVTGMRVVADLSLVRMLKKGSGLTVIACADMPPAKLDKLKKSLPNGLT
CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCE
LTRSTRSELESLTQAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNG
EECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCH
WQLAKALLIELLVLVLVSWVCGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWDWSWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEEECCCCCC
SYSLLMALLAAFASCTWPLVRLLRSQPIRLSARLSLVRFAGKEFKLQALLACALCVAAVA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IYQAPKSQQSGFAIIGLMLLSVALFTPYIIWTLFTSFSYTLRWVKVRWFFADAAASMSYR
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEHHHHHCCCCC
GVATMAFMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSVASRMSQWLGQQP
HHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCC
EVDAVWWRWEKDFASQQGPVQIVSTGASDGELDSLTVKLGVPNYWYHLHHARGVMISESM
CCCCEEEEECHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHCCEEEECCE
ALKLGIRPGDLIDLPEPMGSGWAVFGVYYDYGNPYHQVMMSHQNWMKAFAGTGNVALAVV
EEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE
LKEGLTGESVKKRLDTIFRLDADRIFDNTNIHSHAMRVFDRTFSIAGTLGNITLFIAVCG
ECCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFFSTLAGETSRLRHISLLRCLGVSGKELVLIGGMQLFVFGAISLLIALPLGLTLAKLVI
HHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
DVVIKHSFGWTMQLQMVPGEYVYTVVWSMMALILAGALPIIRLARKSPMKSLREAL
HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA