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The map label for this gene is fdhD [H]

Identifier: 227081677

GI number: 227081677

Start: 1579572

End: 1580585

Strand: Direct

Name: fdhD [H]

Synonym: VCM66_1461

Alternate gene names: 227081677

Gene position: 1579572-1580585 (Clockwise)

Preceding gene: 227081666

Following gene: 227081681

Centisome position: 54.61

GC content: 48.92

Gene sequence:

>1014_bases
TTGCGCCATGGGTACCAGTACCTTGCTTTAAGTAGAGCAACATCATCACTTTTGTGCAGTTTGTTTTTGATTCGGCACCC
TTTTTGCTACATTGACGGCACTTTTTCTTATTCGCTCTACCGCAAGATTTGCACTGACAGATCGGCGGTGAATAAAGCGA
GCAATACACAGGAATCCAGCGTGGCTAAACCTTCCATCATCAAAACCAGCGAAAATCCTCTGCAAACCATTGAGGTTGAA
GTGTATGACGAATACGGCGAAAAACTGGTGAAATCGATCGCCTGTGAACGCCCTCTCACTGTTCTGCTCAACTGGAAAGA
GATAGTGACCTTGATGACGCTCGGTTCGCGGCCAGAAGCTTTAGTGCTGGGTTATCTGAAGAACCAAAGTTTTATTTCCG
ATCCGGAAGCGCTCGATTCCATCATCATCGATTGGGAAACTCATTCGGCCGCGGTGGTTACGCGTGAAAACATTGACCAT
TTAGAGCCTGCGCTGAAGAAAAAAACCGTCACCTCCGGCTGTGGCCAAGGCACCATGTATGGCAACGTGATGAAGCAGCT
TGAACATTATCAAGTGCCGCAACAGCCAATTAAACAGTCACAAATCTACGCTGCTCTGGAAGCATTGACTCACTACAACG
ATACCTACAAAAAAGCCGGCGCGGTGCATGGCTGCGCAATTTGCCAAGAGGATCGGGTGCTCTCTTTTGTGGAAGATGTC
GGTCGCCACAATGCAGTGGATACTTTGGCCGGTGAAATGTGGCTCAATGGCATGCGTGGGGATGACAAAATTTTTTACAC
CACAGGTCGTTTAACCTCCGAGATGGTGATTAAAGTGGCGCAAATGGGGATTCCTGTGCTGCTATCGCGCTCGGGTGTGA
CTCAAATGGGGCTTGAGCTTGCGCAACGTTTTGGCATTACCACGATTGCTCGCGCTTCCGGTCGTCGCTTTCATGTGTAC
AGTGGCGCAGACAAAATGGTGTTTGATGTGAAAGGCCACAGTGAAGAGGCATAG

Upstream 100 bases:

>100_bases
TCGGTTTTACTATGAGCACCATCCGTTAAGGATTCAGGAGAAGTTTGTTCAGTCATAACTCATACTAAATTAACAATCAG
AGTTGAAATTAAAGCAATAA

Downstream 100 bases:

>100_bases
CAACGTCTTTGCACCATAGAGGTTTTTAACGTGTTTCGGATAGCAAAAGAGCCTCACATAGAGGCTCTTAGTATTATTTA
GCATGCAAAATATTGGCTTA

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MRHGYQYLALSRATSSLLCSLFLIRHPFCYIDGTFSYSLYRKICTDRSAVNKASNTQESSVAKPSIIKTSENPLQTIEVE
VYDEYGEKLVKSIACERPLTVLLNWKEIVTLMTLGSRPEALVLGYLKNQSFISDPEALDSIIIDWETHSAAVVTRENIDH
LEPALKKKTVTSGCGQGTMYGNVMKQLEHYQVPQQPIKQSQIYAALEALTHYNDTYKKAGAVHGCAICQEDRVLSFVEDV
GRHNAVDTLAGEMWLNGMRGDDKIFYTTGRLTSEMVIKVAQMGIPVLLSRSGVTQMGLELAQRFGITTIARASGRRFHVY
SGADKMVFDVKGHSEEA

Sequences:

>Translated_337_residues
MRHGYQYLALSRATSSLLCSLFLIRHPFCYIDGTFSYSLYRKICTDRSAVNKASNTQESSVAKPSIIKTSENPLQTIEVE
VYDEYGEKLVKSIACERPLTVLLNWKEIVTLMTLGSRPEALVLGYLKNQSFISDPEALDSIIIDWETHSAAVVTRENIDH
LEPALKKKTVTSGCGQGTMYGNVMKQLEHYQVPQQPIKQSQIYAALEALTHYNDTYKKAGAVHGCAICQEDRVLSFVEDV
GRHNAVDTLAGEMWLNGMRGDDKIFYTTGRLTSEMVIKVAQMGIPVLLSRSGVTQMGLELAQRFGITTIARASGRRFHVY
SGADKMVFDVKGHSEEA
>Mature_337_residues
MRHGYQYLALSRATSSLLCSLFLIRHPFCYIDGTFSYSLYRKICTDRSAVNKASNTQESSVAKPSIIKTSENPLQTIEVE
VYDEYGEKLVKSIACERPLTVLLNWKEIVTLMTLGSRPEALVLGYLKNQSFISDPEALDSIIIDWETHSAAVVTRENIDH
LEPALKKKTVTSGCGQGTMYGNVMKQLEHYQVPQQPIKQSQIYAALEALTHYNDTYKKAGAVHGCAICQEDRVLSFVEDV
GRHNAVDTLAGEMWLNGMRGDDKIFYTTGRLTSEMVIKVAQMGIPVLLSRSGVTQMGLELAQRFGITTIARASGRRFHVY
SGADKMVFDVKGHSEEA

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=264, Percent_Identity=23.4848484848485, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 37574; Mature: 37574

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHGYQYLALSRATSSLLCSLFLIRHPFCYIDGTFSYSLYRKICTDRSAVNKASNTQESS
CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCHHHHHHCCCCCHHH
VAKPSIIKTSENPLQTIEVEVYDEYGEKLVKSIACERPLTVLLNWKEIVTLMTLGSRPEA
CCCCCEEECCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCE
LVLGYLKNQSFISDPEALDSIIIDWETHSAAVVTRENIDHLEPALKKKTVTSGCGQGTMY
EEEEEECCCCCCCCHHHHHHEEEEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCHH
GNVMKQLEHYQVPQQPIKQSQIYAALEALTHYNDTYKKAGAVHGCAICQEDRVLSFVEDV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHCCCCHHHHHHHHH
GRHNAVDTLAGEMWLNGMRGDDKIFYTTGRLTSEMVIKVAQMGIPVLLSRSGVTQMGLEL
HCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEECCCHHHHHHHH
AQRFGITTIARASGRRFHVYSGADKMVFDVKGHSEEA
HHHCCCHHEECCCCCEEEEEECCCEEEEEECCCCCCC
>Mature Secondary Structure
MRHGYQYLALSRATSSLLCSLFLIRHPFCYIDGTFSYSLYRKICTDRSAVNKASNTQESS
CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCHHHHHHCCCCCHHH
VAKPSIIKTSENPLQTIEVEVYDEYGEKLVKSIACERPLTVLLNWKEIVTLMTLGSRPEA
CCCCCEEECCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCE
LVLGYLKNQSFISDPEALDSIIIDWETHSAAVVTRENIDHLEPALKKKTVTSGCGQGTMY
EEEEEECCCCCCCCHHHHHHEEEEECCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCHH
GNVMKQLEHYQVPQQPIKQSQIYAALEALTHYNDTYKKAGAVHGCAICQEDRVLSFVEDV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHCCCCHHHHHHHHH
GRHNAVDTLAGEMWLNGMRGDDKIFYTTGRLTSEMVIKVAQMGIPVLLSRSGVTQMGLEL
HCCCHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEECCCHHHHHHHH
AQRFGITTIARASGRRFHVYSGADKMVFDVKGHSEEA
HHHCCCHHEECCCCCEEEEEECCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]