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The map label for this gene is 227081548

Identifier: 227081548

GI number: 227081548

Start: 1428472

End: 1429002

Strand: Direct

Name: 227081548

Synonym: VCM66_1332

Alternate gene names: NA

Gene position: 1428472-1429002 (Clockwise)

Preceding gene: 227081547

Following gene: 227081549

Centisome position: 49.38

GC content: 47.46

Gene sequence:

>531_bases
ATGAATTACAACCGTGTTGTGTGCTTCGATTTAGAAATGTGTTGTTGGAACGAAAACGGAGTGGGAACCACGGGTGAAAT
CATTGAAATTGGTCTAGCAGAAATCGATCTCGCGGCGGGAGAAATCGTCAAGCGCGCGCAGTACTTTGTCAAACCGGAAA
AAGATGAAATCTCGCTGTTTTGCGCCGAACTTACTGGGATCACACCGCGCAAAATCGAAAAGCAGGGTCGGCCTTTAGCT
GAGGTGATCCAGTCTATGGTCAAAAACTTCGGTGGTTCGAATAAAATTTACGCCTCATGGGGGCGCGATGACCTCATTTT
GCTTAACGAGTGTCGAGAAAAGGGCCTTTCTGTCCCGTTCCAAGAGTTTCTGAACCTTGCCACCTTGTATCGTATTCAAC
ATCGTTTGAAAGACAAACGTATCGGTCATCGCGCGGCTCAGGAATCGCAAGGTATTGAATGGGAAGGGCGTCAGCACTCA
GGCTATGTTGATGCCTACAACTTGGCAAAGTTAGCGTTAACCATGCTGTAA

Upstream 100 bases:

>100_bases
ATCGTGTATCGATTGCGCAGCAATGCAGCAAGGTAGAATCGAATTATGCCTTCAATTCAGGTAGGATGTTCGACTTTATG
TAACAGAGAAAGAGCCAAGA

Downstream 100 bases:

>100_bases
TGTGATATTCAGCAAATTGTTATGCAACGCATCAGATCTTGTTCTAGGCTTTTGTATGGTTGTCCACAAAGCCGAGTACA
AGAATGGAAAATACACTCTA

Product: hypothetical protein

Products: NA

Alternate protein names: Exonuclease RNAse T And DNA Polymerase III; Exonuclease KapD; Exonuclease Superfamily Protein

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MNYNRVVCFDLEMCCWNENGVGTTGEIIEIGLAEIDLAAGEIVKRAQYFVKPEKDEISLFCAELTGITPRKIEKQGRPLA
EVIQSMVKNFGGSNKIYASWGRDDLILLNECREKGLSVPFQEFLNLATLYRIQHRLKDKRIGHRAAQESQGIEWEGRQHS
GYVDAYNLAKLALTML

Sequences:

>Translated_176_residues
MNYNRVVCFDLEMCCWNENGVGTTGEIIEIGLAEIDLAAGEIVKRAQYFVKPEKDEISLFCAELTGITPRKIEKQGRPLA
EVIQSMVKNFGGSNKIYASWGRDDLILLNECREKGLSVPFQEFLNLATLYRIQHRLKDKRIGHRAAQESQGIEWEGRQHS
GYVDAYNLAKLALTML
>Mature_176_residues
MNYNRVVCFDLEMCCWNENGVGTTGEIIEIGLAEIDLAAGEIVKRAQYFVKPEKDEISLFCAELTGITPRKIEKQGRPLA
EVIQSMVKNFGGSNKIYASWGRDDLILLNECREKGLSVPFQEFLNLATLYRIQHRLKDKRIGHRAAQESQGIEWEGRQHS
GYVDAYNLAKLALTML

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI218505680, Length=200, Percent_Identity=30, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI218505674, Length=200, Percent_Identity=30, Blast_Score=75, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19969; Mature: 19969

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYNRVVCFDLEMCCWNENGVGTTGEIIEIGLAEIDLAAGEIVKRAQYFVKPEKDEISLF
CCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
CAELTGITPRKIEKQGRPLAEVIQSMVKNFGGSNKIYASWGRDDLILLNECREKGLSVPF
HHHHCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEHHHHHHCCCCCCH
QEFLNLATLYRIQHRLKDKRIGHRAAQESQGIEWEGRQHSGYVDAYNLAKLALTML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNYNRVVCFDLEMCCWNENGVGTTGEIIEIGLAEIDLAAGEIVKRAQYFVKPEKDEISLF
CCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
CAELTGITPRKIEKQGRPLAEVIQSMVKNFGGSNKIYASWGRDDLILLNECREKGLSVPF
HHHHCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEHHHHHHCCCCCCH
QEFLNLATLYRIQHRLKDKRIGHRAAQESQGIEWEGRQHSGYVDAYNLAKLALTML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA